Click here to switch to the map view.

The map label for this gene is petJ [H]

Identifier: 86608986

GI number: 86608986

Start: 1595531

End: 1595872

Strand: Reverse

Name: petJ [H]

Synonym: CYB_1519

Alternate gene names: 86608986

Gene position: 1595872-1595531 (Counterclockwise)

Preceding gene: 86608988

Following gene: 86608985

Centisome position: 52.38

GC content: 54.39

Gene sequence:

>342_bases
ATGATCAACCTTTTTATCGGGCTTTTGGTGGCAGTATTTGCCCTCTTTTTAGGCCCGCAAATGGCTTCTGCTGAGCCTGA
TTTGGCCTTGGGAGCCAAGGTCTTTCAGGCCAAATGTGTGGGTTGTCACTTGAACGGGCGCAACACTTTGGTGGCAGCGA
AAAACCTTTCTCTGGCGGCTCTTCATGAGTACCACGTAGACACCCCTGAGCTGATCCAGGCCCAAGTGAGAAACGGCAAA
GGGGCCATGCCGGCTTTTGCCAAGATTCTCAAGCCGGAGGAGATCGAGGCGGTGGCGGCCTACGTTTTGGATCGCGCTGA
GCACAACTGGAGTAGAGGCTAG

Upstream 100 bases:

>100_bases
GAAGCTCGACAGGCCGTCTTTTGACCTGGCCCAACGGGCTTGGGATAATGGGCGGGCCTTAAAGGCTAGTTTTCGGTCAG
TCCCTGAGATGAAAATGCGA

Downstream 100 bases:

>100_bases
TGTCCAAAGAGAGGACTCAAGATCCAGCCCTGCTCCAGGGGAGACCAGTGGAGCGGCTGCCTCACGAGCAGGGATGTGAA
GGACAGGGATCCCGCCGCCA

Product: cytochrome c6

Products: NA

Alternate protein names: Cytochrome c-553; Cytochrome c553; Soluble cytochrome f [H]

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MINLFIGLLVAVFALFLGPQMASAEPDLALGAKVFQAKCVGCHLNGRNTLVAAKNLSLAALHEYHVDTPELIQAQVRNGK
GAMPAFAKILKPEEIEAVAAYVLDRAEHNWSRG

Sequences:

>Translated_113_residues
MINLFIGLLVAVFALFLGPQMASAEPDLALGAKVFQAKCVGCHLNGRNTLVAAKNLSLAALHEYHVDTPELIQAQVRNGK
GAMPAFAKILKPEEIEAVAAYVLDRAEHNWSRG
>Mature_113_residues
MINLFIGLLVAVFALFLGPQMASAEPDLALGAKVFQAKCVGCHLNGRNTLVAAKNLSLAALHEYHVDTPELIQAQVRNGK
GAMPAFAKILKPEEIEAVAAYVLDRAEHNWSRG

Specific function: Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis [H]

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cellular thylakoid lumen (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PetJ subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR008168 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 12166; Mature: 12166

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINLFIGLLVAVFALFLGPQMASAEPDLALGAKVFQAKCVGCHLNGRNTLVAAKNLSLAA
CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEEECCCCEEEEECCCCHHH
LHEYHVDTPELIQAQVRNGKGAMPAFAKILKPEEIEAVAAYVLDRAEHNWSRG
HHHHCCCCHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MINLFIGLLVAVFALFLGPQMASAEPDLALGAKVFQAKCVGCHLNGRNTLVAAKNLSLAA
CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEEEECCCCEEEEECCCCHHH
LHEYHVDTPELIQAQVRNGKGAMPAFAKILKPEEIEAVAAYVLDRAEHNWSRG
HHHHCCCCHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1967057 [H]