Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608927

Identifier: 86608927

GI number: 86608927

Start: 1535308

End: 1535922

Strand: Direct

Name: 86608927

Synonym: CYB_1459

Alternate gene names: NA

Gene position: 1535308-1535922 (Clockwise)

Preceding gene: 86608926

Following gene: 86608928

Centisome position: 50.39

GC content: 62.28

Gene sequence:

>615_bases
ATGACCATGGTTCGCGGCAACCCCAACCCCGACCCCAGGGATCCCCAGCAAGAGCTGCCGGTGGTGGATGAGCGTTTTGA
ACAGTTGAGCGCCTACTTGGATGGGGAATTGTCGTCTCAAGAGGCGCGGCAGGTGGAAGATTGGCTGGCCAGCGATCCTC
AGGCGCGGCAACTGTACAGCCAACTGGCAGCTCTGCAGGCCGGTTTGGCCAATCTCAAGGCCCCAACCTTGAACTCCACC
CAGACGGAGCTGTTGATTAGCCGTGTGTTCGCTGAGCTGGATCGGAGGCCGGTGCTCGACCTGGGCTGGCGGCAACGTAA
GGGCACCCCTTGGGGACGGGTGGCAGCGGCTGTAGTGGCCTTGGCAGGGGCGGGCTGGGTGGGATGGCGTTGGTCTCATC
CCCAGCCTTTGGTATCGCTGGAAGATCCGCCGGTGCGCGTGGCCATCGTGCCTGCCTCTGCTCGTGTTGCCCAACGCTAT
CTTTTCGAGGCGGGGCAAAAACAAGATGCCTACTCGATTTTGTTTGAGGCAATGCCCGACCGTGGATCTCGCTCCGCCAA
CGGGACCGGAGCCGTTCGCATCAACGGGACGGAGTCCTTGGTGGGCTGGGAATGA

Upstream 100 bases:

>100_bases
TTGCCGAGATCACAGGGGTGTCTTTGGGCACTGTTAAGTCTCGCATTGCGCGCGCCCGCGCCCGCCTACAATCCACCCTA
AAACCCTACCTTAATGGTGA

Downstream 100 bases:

>100_bases
CCTGAGCAGGCTTGAGAAAGACTGAGGAGCGCAGGGTGGAAAAAGCAGTTCGCTGGGCTTGTGGGCTAGGAGTCTGCCTT
TGGCTATGCAGTCTGGGATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MTMVRGNPNPDPRDPQQELPVVDERFEQLSAYLDGELSSQEARQVEDWLASDPQARQLYSQLAALQAGLANLKAPTLNST
QTELLISRVFAELDRRPVLDLGWRQRKGTPWGRVAAAVVALAGAGWVGWRWSHPQPLVSLEDPPVRVAIVPASARVAQRY
LFEAGQKQDAYSILFEAMPDRGSRSANGTGAVRINGTESLVGWE

Sequences:

>Translated_204_residues
MTMVRGNPNPDPRDPQQELPVVDERFEQLSAYLDGELSSQEARQVEDWLASDPQARQLYSQLAALQAGLANLKAPTLNST
QTELLISRVFAELDRRPVLDLGWRQRKGTPWGRVAAAVVALAGAGWVGWRWSHPQPLVSLEDPPVRVAIVPASARVAQRY
LFEAGQKQDAYSILFEAMPDRGSRSANGTGAVRINGTESLVGWE
>Mature_203_residues
TMVRGNPNPDPRDPQQELPVVDERFEQLSAYLDGELSSQEARQVEDWLASDPQARQLYSQLAALQAGLANLKAPTLNSTQ
TELLISRVFAELDRRPVLDLGWRQRKGTPWGRVAAAVVALAGAGWVGWRWSHPQPLVSLEDPPVRVAIVPASARVAQRYL
FEAGQKQDAYSILFEAMPDRGSRSANGTGAVRINGTESLVGWE

Specific function: Unknown

COG id: COG5662

COG function: function code K; Predicted transmembrane transcriptional regulator (anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22485; Mature: 22353

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMVRGNPNPDPRDPQQELPVVDERFEQLSAYLDGELSSQEARQVEDWLASDPQARQLYS
CCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHH
QLAALQAGLANLKAPTLNSTQTELLISRVFAELDRRPVLDLGWRQRKGTPWGRVAAAVVA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
LAGAGWVGWRWSHPQPLVSLEDPPVRVAIVPASARVAQRYLFEAGQKQDAYSILFEAMPD
HHCCCCCCCCCCCCCCCEECCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHCCC
RGSRSANGTGAVRINGTESLVGWE
CCCCCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
TMVRGNPNPDPRDPQQELPVVDERFEQLSAYLDGELSSQEARQVEDWLASDPQARQLYS
CCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHH
QLAALQAGLANLKAPTLNSTQTELLISRVFAELDRRPVLDLGWRQRKGTPWGRVAAAVVA
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
LAGAGWVGWRWSHPQPLVSLEDPPVRVAIVPASARVAQRYLFEAGQKQDAYSILFEAMPD
HHCCCCCCCCCCCCCCCEECCCCCEEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHCCC
RGSRSANGTGAVRINGTESLVGWE
CCCCCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA