| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608854
Identifier: 86608854
GI number: 86608854
Start: 1457260
End: 1457724
Strand: Direct
Name: 86608854
Synonym: CYB_1385
Alternate gene names: NA
Gene position: 1457260-1457724 (Clockwise)
Preceding gene: 86608853
Following gene: 86608855
Centisome position: 47.83
GC content: 59.78
Gene sequence:
>465_bases ATGCAGCGAAGGCATGAACGGATCCCATTGCTGGTGCTGCTGAGCAGTGTTCTGGTGGGGTGTGGGGGCACGACCGGCAG CAGCGATCTTCTGCCCCTGCCGCCTCCCATACCTGCTCCATCCCTCACCATTACTGATCTCTCTCCGCGCACCGTCTCGG TGGGGCAAACTCCAACCTTTGTGGTGTCTTTCCGGGTAGAAGCCCCTGCCGGGATCCGGGGTTCCAACGCCTTTTTGGCT TCCGTCACCACCCCACTCGGCAATTTCGTAACTCTGGGAGCTTTTGATGCCGCTCAGTTGCCCGGCTGCTTCGTTGGGGC GACCACCTGCACCGTTACAGGGCTGACCCTGACCCAGAATCGCTTTACCCTCACTCAAACGGGATCCCATCAGCTCACCA TCAGTGTGTTCGATCGGCAGGAGCGGCTGGGCAGCGGCAGTTTCACATTTACCGGAGTGCTTTGA
Upstream 100 bases:
>100_bases CTTCTCGCCAGGTTCTCTCCTTTCCGCCCGCTGGCTTGGTGGAGACAAACTCTAGACAATAAGCTCAAAAAAAGAAGACC TTTTGGAGTGGAGGAAAACC
Downstream 100 bases:
>100_bases AAACGGTTTGGATAAAGACACAGAGGATACTAGTCTTGCAGGATCCCCAGAAACTCAAAACTCACTCTAGGCCCTATCTC TCAGGTGGATTTCTGAGGCT
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 154; Mature: 154
Protein sequence:
>154_residues MQRRHERIPLLVLLSSVLVGCGGTTGSSDLLPLPPPIPAPSLTITDLSPRTVSVGQTPTFVVSFRVEAPAGIRGSNAFLA SVTTPLGNFVTLGAFDAAQLPGCFVGATTCTVTGLTLTQNRFTLTQTGSHQLTISVFDRQERLGSGSFTFTGVL
Sequences:
>Translated_154_residues MQRRHERIPLLVLLSSVLVGCGGTTGSSDLLPLPPPIPAPSLTITDLSPRTVSVGQTPTFVVSFRVEAPAGIRGSNAFLA SVTTPLGNFVTLGAFDAAQLPGCFVGATTCTVTGLTLTQNRFTLTQTGSHQLTISVFDRQERLGSGSFTFTGVL >Mature_154_residues MQRRHERIPLLVLLSSVLVGCGGTTGSSDLLPLPPPIPAPSLTITDLSPRTVSVGQTPTFVVSFRVEAPAGIRGSNAFLA SVTTPLGNFVTLGAFDAAQLPGCFVGATTCTVTGLTLTQNRFTLTQTGSHQLTISVFDRQERLGSGSFTFTGVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16076; Mature: 16076
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRRHERIPLLVLLSSVLVGCGGTTGSSDLLPLPPPIPAPSLTITDLSPRTVSVGQTPTF CCCCHHCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEEECCCCEEECCCCCEE VVSFRVEAPAGIRGSNAFLASVTTPLGNFVTLGAFDAAQLPGCFVGATTCTVTGLTLTQN EEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCCHHHCCCEEEECCEEEEEEEEEECC RFTLTQTGSHQLTISVFDRQERLGSGSFTFTGVL EEEEEECCCEEEEEEEECCHHHCCCCCEEEEEEC >Mature Secondary Structure MQRRHERIPLLVLLSSVLVGCGGTTGSSDLLPLPPPIPAPSLTITDLSPRTVSVGQTPTF CCCCHHCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEEECCCCEEECCCCCEE VVSFRVEAPAGIRGSNAFLASVTTPLGNFVTLGAFDAAQLPGCFVGATTCTVTGLTLTQN EEEEEEECCCCCCCCCEEEEEECCCCCCEEEECCCCHHHCCCEEEECCEEEEEEEEEECC RFTLTQTGSHQLTISVFDRQERLGSGSFTFTGVL EEEEEECCCEEEEEEEECCHHHCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA