Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608829

Identifier: 86608829

GI number: 86608829

Start: 1423513

End: 1425348

Strand: Reverse

Name: 86608829

Synonym: CYB_1355

Alternate gene names: NA

Gene position: 1425348-1423513 (Counterclockwise)

Preceding gene: 86608833

Following gene: 86608826

Centisome position: 46.78

GC content: 62.31

Gene sequence:

>1836_bases
ATGATCTCTTCCTTATTGTCCTTACTGCCTATTGGTCTGCAGAAATCCGGCGAACACCAATCTACAGCAGTCCTGCCCGG
CCTGCGGGCGCAGCGCCATCGTTCTGCAATGCTGACGCGGCTGGCAACCTCTCTGATGCTTGGCACCACCTTACTGCTGA
CAGCAAAGTTGGATCCCGGCTGGGCGCAAACTTCCCTGGACACCGGCATTACCGGTGAGCAGACCCTGCCTCAAGCTCCC
CCTCTCCCGGACAATCGCCCGGCCATTTTTGTGGATGCAGCCAACGGCAGCGATACCCGTGGGGATGGATCCCGCAATAA
CCCCTTCAAGACGATTACTTATGCCATTCAGCGGGCTGAGGCTGGCAGCGTCATTCAGCTTTTTCCTGGGGTGTATAGCG
AGGAGAGCGGCGAAACCTTCCCCATCCGTCTGAAAGCCGGCCTCACCTTGCGTGGGGACGAGTCCACCTTGGGAGAGGGC
TATCTCATCACCGGCGGCGGTACCTACATGAGCCCGACCCTAGGCCGACAAAATGTTGCTCTGCTGGCAGAGACCGGCGC
AGAAGTGCGAGGAATTACCCTGCGCAACCAGGGGCGGCGCGGCTATGCCCTCTGGGTGGAATCTGCCTCCCCGCGCATTC
TCAACAACAGCTTTGTGGGCAGCATCCACGATGGGATCTTCATTGCCGGCGCTGCCAATCCCTGGGTGGAGGGCAACCGC
TTCTATAAAAACGGGGCCAACGGCATTTCCGTCTTGGGCACCTCCCAGCCCACCATCATCAATAACCTGTTCCAGGAGAC
CGGCTTTGGCATCACCATCGACCAGCGCTCGGCGCCTATTGTGCGCAACAACCGCATCCTGCAGAACCGTACCGGCGTGA
TCGTCGGGGGCAGCTCCAGGCCCATCCTGCGCAACAATCTCATCGCCCAGAACTTGGAGACCGGCCTCACCGCCATCACC
ACTGCCCAGCCGGATTTGGGCACGGCCACGGATCCCGGCAACAACATCTTTGAGGGCAACGGCCAATACGATATCAACAA
CGCCACCCGCGGCCTGCGCCTCAATGCCAACGGCAACCAACTGCGGGGCAAAGCCAAAGGGGATCTGGATCTGTCCGGTC
AAACCACCGTTGCCGCCCTTCCCGACAGCGCTCCCCGCCCCATTGCCCCTGGCACTTTGGCTCTGCCCAGCGCTCCGGCC
CAGCCGGCTACTCCCAGGGATCCCCGGCCAGCGGCTGAGACCCCCTCCACCTTGCCGGTTTTAACGGTGCCCCAGTCTAC
TGCCCCGGTTCCCCCCTCTCCGCCCCAAGGATCCGGAGGGCGCATCTTGCCAGATCCCTCCAGCCCTCAGGCAACTCCCC
AGCCCCAACCTCCGGGGGAGCAGTTTGTGGCTGTCCCCTTCACCCCCGATGGCTCTACCACACCTGCCCAGCCGGCTGAC
CCTGCCCCCGCAGCTCCTGTTCCCAGGCCACCCTCGGCTCCCCTCACAGATATCACCACCCTTCTGCCCCCGCCGGCCCG
TCGCTCATCGGCAGGGATCCCGGCCACTCCCTCTGCTCCCACTACAACTCCAGTTGCCCCCCCTGTGGTTGCTGTGGGTA
ACGACTCCGTTTCGCCAACGCGAACGGCAACTCAATTTCGCGTGTTGGTGACCCCCAAGAGCAGCGATGACTTGAACCGA
TTGCGGCAGCTCATCCCCGAGGCGGTGGAAACGGTTTTCAACGGCAGAACAGTGTTGCAGGCGGGCCTGTACGACAGTCG
CAGCCAGGCCCAGTCGGTCTTGGATCGGCTGTTGGATGCCGGCTTTGAGGCGGTTGCCGAGATGATTTTCCGCTAG

Upstream 100 bases:

>100_bases
TATTTGGAGTTGGCGGATAGGGCAGGATCCCGCCTACTCAGTTTGGTAGGATAACCTCGGCCTTTCTTCTCTAGCCCAGC
CTGGTGTGAGGATAACCACC

Downstream 100 bases:

>100_bases
CGACCCCCCACACTGCCGGCTTGCTTCTCCATAGCGGTACGAGGGAGCTTTGATCCCAGTTCTTTGGCGGGGTGGCCAGC
CATTGAGCCCAAGTCTCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 611; Mature: 611

Protein sequence:

>611_residues
MISSLLSLLPIGLQKSGEHQSTAVLPGLRAQRHRSAMLTRLATSLMLGTTLLLTAKLDPGWAQTSLDTGITGEQTLPQAP
PLPDNRPAIFVDAANGSDTRGDGSRNNPFKTITYAIQRAEAGSVIQLFPGVYSEESGETFPIRLKAGLTLRGDESTLGEG
YLITGGGTYMSPTLGRQNVALLAETGAEVRGITLRNQGRRGYALWVESASPRILNNSFVGSIHDGIFIAGAANPWVEGNR
FYKNGANGISVLGTSQPTIINNLFQETGFGITIDQRSAPIVRNNRILQNRTGVIVGGSSRPILRNNLIAQNLETGLTAIT
TAQPDLGTATDPGNNIFEGNGQYDINNATRGLRLNANGNQLRGKAKGDLDLSGQTTVAALPDSAPRPIAPGTLALPSAPA
QPATPRDPRPAAETPSTLPVLTVPQSTAPVPPSPPQGSGGRILPDPSSPQATPQPQPPGEQFVAVPFTPDGSTTPAQPAD
PAPAAPVPRPPSAPLTDITTLLPPPARRSSAGIPATPSAPTTTPVAPPVVAVGNDSVSPTRTATQFRVLVTPKSSDDLNR
LRQLIPEAVETVFNGRTVLQAGLYDSRSQAQSVLDRLLDAGFEAVAEMIFR

Sequences:

>Translated_611_residues
MISSLLSLLPIGLQKSGEHQSTAVLPGLRAQRHRSAMLTRLATSLMLGTTLLLTAKLDPGWAQTSLDTGITGEQTLPQAP
PLPDNRPAIFVDAANGSDTRGDGSRNNPFKTITYAIQRAEAGSVIQLFPGVYSEESGETFPIRLKAGLTLRGDESTLGEG
YLITGGGTYMSPTLGRQNVALLAETGAEVRGITLRNQGRRGYALWVESASPRILNNSFVGSIHDGIFIAGAANPWVEGNR
FYKNGANGISVLGTSQPTIINNLFQETGFGITIDQRSAPIVRNNRILQNRTGVIVGGSSRPILRNNLIAQNLETGLTAIT
TAQPDLGTATDPGNNIFEGNGQYDINNATRGLRLNANGNQLRGKAKGDLDLSGQTTVAALPDSAPRPIAPGTLALPSAPA
QPATPRDPRPAAETPSTLPVLTVPQSTAPVPPSPPQGSGGRILPDPSSPQATPQPQPPGEQFVAVPFTPDGSTTPAQPAD
PAPAAPVPRPPSAPLTDITTLLPPPARRSSAGIPATPSAPTTTPVAPPVVAVGNDSVSPTRTATQFRVLVTPKSSDDLNR
LRQLIPEAVETVFNGRTVLQAGLYDSRSQAQSVLDRLLDAGFEAVAEMIFR
>Mature_611_residues
MISSLLSLLPIGLQKSGEHQSTAVLPGLRAQRHRSAMLTRLATSLMLGTTLLLTAKLDPGWAQTSLDTGITGEQTLPQAP
PLPDNRPAIFVDAANGSDTRGDGSRNNPFKTITYAIQRAEAGSVIQLFPGVYSEESGETFPIRLKAGLTLRGDESTLGEG
YLITGGGTYMSPTLGRQNVALLAETGAEVRGITLRNQGRRGYALWVESASPRILNNSFVGSIHDGIFIAGAANPWVEGNR
FYKNGANGISVLGTSQPTIINNLFQETGFGITIDQRSAPIVRNNRILQNRTGVIVGGSSRPILRNNLIAQNLETGLTAIT
TAQPDLGTATDPGNNIFEGNGQYDINNATRGLRLNANGNQLRGKAKGDLDLSGQTTVAALPDSAPRPIAPGTLALPSAPA
QPATPRDPRPAAETPSTLPVLTVPQSTAPVPPSPPQGSGGRILPDPSSPQATPQPQPPGEQFVAVPFTPDGSTTPAQPAD
PAPAAPVPRPPSAPLTDITTLLPPPARRSSAGIPATPSAPTTTPVAPPVVAVGNDSVSPTRTATQFRVLVTPKSSDDLNR
LRQLIPEAVETVFNGRTVLQAGLYDSRSQAQSVLDRLLDAGFEAVAEMIFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63961; Mature: 63961

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSLLSLLPIGLQKSGEHQSTAVLPGLRAQRHRSAMLTRLATSLMLGTTLLLTAKLDPG
CHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCC
WAQTSLDTGITGEQTLPQAPPLPDNRPAIFVDAANGSDTRGDGSRNNPFKTITYAIQRAE
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHCC
AGSVIQLFPGVYSEESGETFPIRLKAGLTLRGDESTLGEGYLITGGGTYMSPTLGRQNVA
CCCEEEECCCCCCCCCCCEEEEEEEECEEEECCCCCCCCCEEEECCCCEECCCCCCCCEE
LLAETGAEVRGITLRNQGRRGYALWVESASPRILNNSFVGSIHDGIFIAGAANPWVEGNR
EEEECCCCEEEEEEECCCCCEEEEEEECCCCEEECCCCCEECCCCEEEEECCCCCCCCCC
FYKNGANGISVLGTSQPTIINNLFQETGFGITIDQRSAPIVRNNRILQNRTGVIVGGSSR
EEECCCCCEEEEECCCCHHHHHHHHHCCCEEEECCCCCCEEECCEEEECCCEEEECCCCC
PILRNNLIAQNLETGLTAITTAQPDLGTATDPGNNIFEGNGQYDINNATRGLRLNANGNQ
CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEECCCCCEEECCCCCCEEECCCCCE
LRGKAKGDLDLSGQTTVAALPDSAPRPIAPGTLALPSAPAQPATPRDPRPAAETPSTLPV
ECCCCCCCEECCCCEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEE
LTVPQSTAPVPPSPPQGSGGRILPDPSSPQATPQPQPPGEQFVAVPFTPDGSTTPAQPAD
EECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
PAPAAPVPRPPSAPLTDITTLLPPPARRSSAGIPATPSAPTTTPVAPPVVAVGNDSVSPT
CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
RTATQFRVLVTPKSSDDLNRLRQLIPEAVETVFNGRTVLQAGLYDSRSQAQSVLDRLLDA
CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
GFEAVAEMIFR
HHHHHHHHHCC
>Mature Secondary Structure
MISSLLSLLPIGLQKSGEHQSTAVLPGLRAQRHRSAMLTRLATSLMLGTTLLLTAKLDPG
CHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCC
WAQTSLDTGITGEQTLPQAPPLPDNRPAIFVDAANGSDTRGDGSRNNPFKTITYAIQRAE
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHCC
AGSVIQLFPGVYSEESGETFPIRLKAGLTLRGDESTLGEGYLITGGGTYMSPTLGRQNVA
CCCEEEECCCCCCCCCCCEEEEEEEECEEEECCCCCCCCCEEEECCCCEECCCCCCCCEE
LLAETGAEVRGITLRNQGRRGYALWVESASPRILNNSFVGSIHDGIFIAGAANPWVEGNR
EEEECCCCEEEEEEECCCCCEEEEEEECCCCEEECCCCCEECCCCEEEEECCCCCCCCCC
FYKNGANGISVLGTSQPTIINNLFQETGFGITIDQRSAPIVRNNRILQNRTGVIVGGSSR
EEECCCCCEEEEECCCCHHHHHHHHHCCCEEEECCCCCCEEECCEEEECCCEEEECCCCC
PILRNNLIAQNLETGLTAITTAQPDLGTATDPGNNIFEGNGQYDINNATRGLRLNANGNQ
CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEECCCCCEEECCCCCCEEECCCCCE
LRGKAKGDLDLSGQTTVAALPDSAPRPIAPGTLALPSAPAQPATPRDPRPAAETPSTLPV
ECCCCCCCEECCCCEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEE
LTVPQSTAPVPPSPPQGSGGRILPDPSSPQATPQPQPPGEQFVAVPFTPDGSTTPAQPAD
EECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
PAPAAPVPRPPSAPLTDITTLLPPPARRSSAGIPATPSAPTTTPVAPPVVAVGNDSVSPT
CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC
RTATQFRVLVTPKSSDDLNRLRQLIPEAVETVFNGRTVLQAGLYDSRSQAQSVLDRLLDA
CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
GFEAVAEMIFR
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA