| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608821
Identifier: 86608821
GI number: 86608821
Start: 1415906
End: 1417561
Strand: Reverse
Name: 86608821
Synonym: CYB_1347
Alternate gene names: NA
Gene position: 1417561-1415906 (Counterclockwise)
Preceding gene: 86608822
Following gene: 86608820
Centisome position: 46.53
GC content: 58.03
Gene sequence:
>1656_bases ATGTGTTATTCTGCCCAGCAAGGTACCCGTCCTTGTTCAAAAACCGCAAAGATCCTCGTAAGCTTAGATCCACCTACTCC TGCTTGGCAGCTCCCTATGGTTGTCTCGGATCCCTTTGGCCTTGTTGTGCAAGAAGTGCAGCAGGGCGGGTACGCAGACC GAGTGAAAAAGCTGGTTTACTTTGCCTGCACCAGCACTTGGGAAAGCGATGTCAGCAAGTTGAACCAAATAGACCTGAAA GCTCTGCTGGAGCAGCTCTGCCGCCAGCACGCTACCCTTGATGCTTTGGGCCAGCGCTTTCGAGATGCCATTAGCCGCAT CAACAAAAAAGCCGAGTATGCTCGCATCGCCAAGATGCTGCTAAGCAAGCTACAGCCCCTGTATCAACAGCCCCAAGCGG ATCCCTCTAGCCCACTCATGCCCTCGCCCAAGGAGCCATCAGCTTGGGCCGCACCCTCGCCTATCTTGTCCTTGGAGTAT GGAAGCCCACGACTGCAAAAGCAAGACTATGATCCCTTCGAGTTGCGGGCAGGGGTGATGCGGCAAACCAGTCCTTTGCG GGCCAAGCTGGTTCTGTTCACGGCTTTGTACCACAAAATAGAGCCCACCCTGCAAGGGTTGGCCGCCCTGCGACGCCACA GCCTGGACGAACTGCTCAGAGCCCTTTACGATGCCTGCCACTCCCCCCAAGAACTGGAAACCCGGCTGAAGGAGGCGGTG CAGCAGTTGCAGGAGCCGGATCAGGATGGCCAAGCCGCCAACGCCGTGCTGCAGATGCTGAAGCCTCTTTACGTTGAGGT GCCCCCGGAAACGGTCGCCGCTGGAGGGTTGGCTGCCGAGCTCCCCTCTGCCGATCTGGATTGGCTGAATACGGAAGATG CCGTTCGTGCCGGCAGGACAGAGTCCTTGTCCGGTTCCATGACTTGGATTGACGCTGGGATCCCAGAGGATGAGGAAGAG CCTGCAGAGCTTTCGGCTTTTGCGACCCCGGCAACACCATCCGCCCCCTCTTCTGACCTGCAACAGGAGCTCCCAGAGCC CTGCTGCCAACTGCTCCATCGCAGCGCCGGATCCCTGATGGTTGCCATCGAGAATACCCTAAGCGAGTTGGGCAATGCCC TGGACGAAGGGCTACAGGATGAGGATCCCGCCCAATATCTGACGCTCAAACACCAGGTGCTGCGCGGCTTCTTGAGGGAT GTCGAGGGATCCGCCGCAATGTTCATGGGGATCTTGAAAAAGCTAGAACAATCGGAGTGGCGCCTGGTGCAGCCCCTGCG CGTCAGCAATGCAAAACAGGCTCTGCCGGAGGCGGTTACCGAAATGCCCGCTGAGCTGGCGGATCCCTATGCTTCCCTAA GACAGGTGTTGGCCAGCAGCGAGCTGGCCCAGCAAAAGCCGCAGTTGGAGCAGGAGGTGATGCGTTTGGTGCAGCGCAGC GTCGGCTCTGTCAAGACTGCTATCGAACAGGCCCTGAGCGAGTTGGGCAAGGCGTTGGATGAGCAGTTCCAAACCTGCAC CCTAGAGGAAGCCTTGGTTCTCAAGTACCAAACACTACGCGCCTTTTTGCAGGAAGTGGGGGAGATCTCCACCAAATTTG CTGCTTTCTTGGATCGCATGGAGGAGGCAGAGCGCCGTCTGTTCGGGCTGGTTTGA
Upstream 100 bases:
>100_bases CCGCCATGTAGTACAGGTGGAAAGAGCCCTGCAAAAAATAGGCCGCTAAATCCCACTTGATGGCTGGGGGATCCCTGGGC AAACATCAGGTCTGGGAAGG
Downstream 100 bases:
>100_bases AGCTCAAACCCGCTGTTTGGGGATCCCGTTCAACACTCACGATCAGCCGCGCCGAGTGTTGGGGAAACGCCTTGATTTTC TTCTAGAATGGCCGCTAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 551; Mature: 551
Protein sequence:
>551_residues MCYSAQQGTRPCSKTAKILVSLDPPTPAWQLPMVVSDPFGLVVQEVQQGGYADRVKKLVYFACTSTWESDVSKLNQIDLK ALLEQLCRQHATLDALGQRFRDAISRINKKAEYARIAKMLLSKLQPLYQQPQADPSSPLMPSPKEPSAWAAPSPILSLEY GSPRLQKQDYDPFELRAGVMRQTSPLRAKLVLFTALYHKIEPTLQGLAALRRHSLDELLRALYDACHSPQELETRLKEAV QQLQEPDQDGQAANAVLQMLKPLYVEVPPETVAAGGLAAELPSADLDWLNTEDAVRAGRTESLSGSMTWIDAGIPEDEEE PAELSAFATPATPSAPSSDLQQELPEPCCQLLHRSAGSLMVAIENTLSELGNALDEGLQDEDPAQYLTLKHQVLRGFLRD VEGSAAMFMGILKKLEQSEWRLVQPLRVSNAKQALPEAVTEMPAELADPYASLRQVLASSELAQQKPQLEQEVMRLVQRS VGSVKTAIEQALSELGKALDEQFQTCTLEEALVLKYQTLRAFLQEVGEISTKFAAFLDRMEEAERRLFGLV
Sequences:
>Translated_551_residues MCYSAQQGTRPCSKTAKILVSLDPPTPAWQLPMVVSDPFGLVVQEVQQGGYADRVKKLVYFACTSTWESDVSKLNQIDLK ALLEQLCRQHATLDALGQRFRDAISRINKKAEYARIAKMLLSKLQPLYQQPQADPSSPLMPSPKEPSAWAAPSPILSLEY GSPRLQKQDYDPFELRAGVMRQTSPLRAKLVLFTALYHKIEPTLQGLAALRRHSLDELLRALYDACHSPQELETRLKEAV QQLQEPDQDGQAANAVLQMLKPLYVEVPPETVAAGGLAAELPSADLDWLNTEDAVRAGRTESLSGSMTWIDAGIPEDEEE PAELSAFATPATPSAPSSDLQQELPEPCCQLLHRSAGSLMVAIENTLSELGNALDEGLQDEDPAQYLTLKHQVLRGFLRD VEGSAAMFMGILKKLEQSEWRLVQPLRVSNAKQALPEAVTEMPAELADPYASLRQVLASSELAQQKPQLEQEVMRLVQRS VGSVKTAIEQALSELGKALDEQFQTCTLEEALVLKYQTLRAFLQEVGEISTKFAAFLDRMEEAERRLFGLV >Mature_551_residues MCYSAQQGTRPCSKTAKILVSLDPPTPAWQLPMVVSDPFGLVVQEVQQGGYADRVKKLVYFACTSTWESDVSKLNQIDLK ALLEQLCRQHATLDALGQRFRDAISRINKKAEYARIAKMLLSKLQPLYQQPQADPSSPLMPSPKEPSAWAAPSPILSLEY GSPRLQKQDYDPFELRAGVMRQTSPLRAKLVLFTALYHKIEPTLQGLAALRRHSLDELLRALYDACHSPQELETRLKEAV QQLQEPDQDGQAANAVLQMLKPLYVEVPPETVAAGGLAAELPSADLDWLNTEDAVRAGRTESLSGSMTWIDAGIPEDEEE PAELSAFATPATPSAPSSDLQQELPEPCCQLLHRSAGSLMVAIENTLSELGNALDEGLQDEDPAQYLTLKHQVLRGFLRD VEGSAAMFMGILKKLEQSEWRLVQPLRVSNAKQALPEAVTEMPAELADPYASLRQVLASSELAQQKPQLEQEVMRLVQRS VGSVKTAIEQALSELGKALDEQFQTCTLEEALVLKYQTLRAFLQEVGEISTKFAAFLDRMEEAERRLFGLV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60987; Mature: 60987
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCYSAQQGTRPCSKTAKILVSLDPPTPAWQLPMVVSDPFGLVVQEVQQGGYADRVKKLVY CCCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCHHCCHHHHHHHHHHHCCHHHHHHHHHH FACTSTWESDVSKLNQIDLKALLEQLCRQHATLDALGQRFRDAISRINKKAEYARIAKML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSKLQPLYQQPQADPSSPLMPSPKEPSAWAAPSPILSLEYGSPRLQKQDYDPFELRAGVM HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHH RQTSPLRAKLVLFTALYHKIEPTLQGLAALRRHSLDELLRALYDACHSPQELETRLKEAV HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHH QQLQEPDQDGQAANAVLQMLKPLYVEVPPETVAAGGLAAELPSADLDWLNTEDAVRAGRT HHHHCCCCCCHHHHHHHHHHHHHHEECCCHHHHHCCHHHHCCCCCCCCCCCHHHHHCCCC ESLSGSMTWIDAGIPEDEEEPAELSAFATPATPSAPSSDLQQELPEPCCQLLHRSAGSLM CCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VAIENTLSELGNALDEGLQDEDPAQYLTLKHQVLRGFLRDVEGSAAMFMGILKKLEQSEW EHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH RLVQPLRVSNAKQALPEAVTEMPAELADPYASLRQVLASSELAQQKPQLEQEVMRLVQRS HHHHHHHHCCHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH VGSVKTAIEQALSELGKALDEQFQTCTLEEALVLKYQTLRAFLQEVGEISTKFAAFLDRM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEAERRLFGLV HHHHHHHHCCC >Mature Secondary Structure MCYSAQQGTRPCSKTAKILVSLDPPTPAWQLPMVVSDPFGLVVQEVQQGGYADRVKKLVY CCCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCHHCCHHHHHHHHHHHCCHHHHHHHHHH FACTSTWESDVSKLNQIDLKALLEQLCRQHATLDALGQRFRDAISRINKKAEYARIAKML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSKLQPLYQQPQADPSSPLMPSPKEPSAWAAPSPILSLEYGSPRLQKQDYDPFELRAGVM HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHH RQTSPLRAKLVLFTALYHKIEPTLQGLAALRRHSLDELLRALYDACHSPQELETRLKEAV HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHH QQLQEPDQDGQAANAVLQMLKPLYVEVPPETVAAGGLAAELPSADLDWLNTEDAVRAGRT HHHHCCCCCCHHHHHHHHHHHHHHEECCCHHHHHCCHHHHCCCCCCCCCCCHHHHHCCCC ESLSGSMTWIDAGIPEDEEEPAELSAFATPATPSAPSSDLQQELPEPCCQLLHRSAGSLM CCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE VAIENTLSELGNALDEGLQDEDPAQYLTLKHQVLRGFLRDVEGSAAMFMGILKKLEQSEW EHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH RLVQPLRVSNAKQALPEAVTEMPAELADPYASLRQVLASSELAQQKPQLEQEVMRLVQRS HHHHHHHHCCHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH VGSVKTAIEQALSELGKALDEQFQTCTLEEALVLKYQTLRAFLQEVGEISTKFAAFLDRM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEAERRLFGLV HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA