Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86608821

Identifier: 86608821

GI number: 86608821

Start: 1415906

End: 1417561

Strand: Reverse

Name: 86608821

Synonym: CYB_1347

Alternate gene names: NA

Gene position: 1417561-1415906 (Counterclockwise)

Preceding gene: 86608822

Following gene: 86608820

Centisome position: 46.53

GC content: 58.03

Gene sequence:

>1656_bases
ATGTGTTATTCTGCCCAGCAAGGTACCCGTCCTTGTTCAAAAACCGCAAAGATCCTCGTAAGCTTAGATCCACCTACTCC
TGCTTGGCAGCTCCCTATGGTTGTCTCGGATCCCTTTGGCCTTGTTGTGCAAGAAGTGCAGCAGGGCGGGTACGCAGACC
GAGTGAAAAAGCTGGTTTACTTTGCCTGCACCAGCACTTGGGAAAGCGATGTCAGCAAGTTGAACCAAATAGACCTGAAA
GCTCTGCTGGAGCAGCTCTGCCGCCAGCACGCTACCCTTGATGCTTTGGGCCAGCGCTTTCGAGATGCCATTAGCCGCAT
CAACAAAAAAGCCGAGTATGCTCGCATCGCCAAGATGCTGCTAAGCAAGCTACAGCCCCTGTATCAACAGCCCCAAGCGG
ATCCCTCTAGCCCACTCATGCCCTCGCCCAAGGAGCCATCAGCTTGGGCCGCACCCTCGCCTATCTTGTCCTTGGAGTAT
GGAAGCCCACGACTGCAAAAGCAAGACTATGATCCCTTCGAGTTGCGGGCAGGGGTGATGCGGCAAACCAGTCCTTTGCG
GGCCAAGCTGGTTCTGTTCACGGCTTTGTACCACAAAATAGAGCCCACCCTGCAAGGGTTGGCCGCCCTGCGACGCCACA
GCCTGGACGAACTGCTCAGAGCCCTTTACGATGCCTGCCACTCCCCCCAAGAACTGGAAACCCGGCTGAAGGAGGCGGTG
CAGCAGTTGCAGGAGCCGGATCAGGATGGCCAAGCCGCCAACGCCGTGCTGCAGATGCTGAAGCCTCTTTACGTTGAGGT
GCCCCCGGAAACGGTCGCCGCTGGAGGGTTGGCTGCCGAGCTCCCCTCTGCCGATCTGGATTGGCTGAATACGGAAGATG
CCGTTCGTGCCGGCAGGACAGAGTCCTTGTCCGGTTCCATGACTTGGATTGACGCTGGGATCCCAGAGGATGAGGAAGAG
CCTGCAGAGCTTTCGGCTTTTGCGACCCCGGCAACACCATCCGCCCCCTCTTCTGACCTGCAACAGGAGCTCCCAGAGCC
CTGCTGCCAACTGCTCCATCGCAGCGCCGGATCCCTGATGGTTGCCATCGAGAATACCCTAAGCGAGTTGGGCAATGCCC
TGGACGAAGGGCTACAGGATGAGGATCCCGCCCAATATCTGACGCTCAAACACCAGGTGCTGCGCGGCTTCTTGAGGGAT
GTCGAGGGATCCGCCGCAATGTTCATGGGGATCTTGAAAAAGCTAGAACAATCGGAGTGGCGCCTGGTGCAGCCCCTGCG
CGTCAGCAATGCAAAACAGGCTCTGCCGGAGGCGGTTACCGAAATGCCCGCTGAGCTGGCGGATCCCTATGCTTCCCTAA
GACAGGTGTTGGCCAGCAGCGAGCTGGCCCAGCAAAAGCCGCAGTTGGAGCAGGAGGTGATGCGTTTGGTGCAGCGCAGC
GTCGGCTCTGTCAAGACTGCTATCGAACAGGCCCTGAGCGAGTTGGGCAAGGCGTTGGATGAGCAGTTCCAAACCTGCAC
CCTAGAGGAAGCCTTGGTTCTCAAGTACCAAACACTACGCGCCTTTTTGCAGGAAGTGGGGGAGATCTCCACCAAATTTG
CTGCTTTCTTGGATCGCATGGAGGAGGCAGAGCGCCGTCTGTTCGGGCTGGTTTGA

Upstream 100 bases:

>100_bases
CCGCCATGTAGTACAGGTGGAAAGAGCCCTGCAAAAAATAGGCCGCTAAATCCCACTTGATGGCTGGGGGATCCCTGGGC
AAACATCAGGTCTGGGAAGG

Downstream 100 bases:

>100_bases
AGCTCAAACCCGCTGTTTGGGGATCCCGTTCAACACTCACGATCAGCCGCGCCGAGTGTTGGGGAAACGCCTTGATTTTC
TTCTAGAATGGCCGCTAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 551; Mature: 551

Protein sequence:

>551_residues
MCYSAQQGTRPCSKTAKILVSLDPPTPAWQLPMVVSDPFGLVVQEVQQGGYADRVKKLVYFACTSTWESDVSKLNQIDLK
ALLEQLCRQHATLDALGQRFRDAISRINKKAEYARIAKMLLSKLQPLYQQPQADPSSPLMPSPKEPSAWAAPSPILSLEY
GSPRLQKQDYDPFELRAGVMRQTSPLRAKLVLFTALYHKIEPTLQGLAALRRHSLDELLRALYDACHSPQELETRLKEAV
QQLQEPDQDGQAANAVLQMLKPLYVEVPPETVAAGGLAAELPSADLDWLNTEDAVRAGRTESLSGSMTWIDAGIPEDEEE
PAELSAFATPATPSAPSSDLQQELPEPCCQLLHRSAGSLMVAIENTLSELGNALDEGLQDEDPAQYLTLKHQVLRGFLRD
VEGSAAMFMGILKKLEQSEWRLVQPLRVSNAKQALPEAVTEMPAELADPYASLRQVLASSELAQQKPQLEQEVMRLVQRS
VGSVKTAIEQALSELGKALDEQFQTCTLEEALVLKYQTLRAFLQEVGEISTKFAAFLDRMEEAERRLFGLV

Sequences:

>Translated_551_residues
MCYSAQQGTRPCSKTAKILVSLDPPTPAWQLPMVVSDPFGLVVQEVQQGGYADRVKKLVYFACTSTWESDVSKLNQIDLK
ALLEQLCRQHATLDALGQRFRDAISRINKKAEYARIAKMLLSKLQPLYQQPQADPSSPLMPSPKEPSAWAAPSPILSLEY
GSPRLQKQDYDPFELRAGVMRQTSPLRAKLVLFTALYHKIEPTLQGLAALRRHSLDELLRALYDACHSPQELETRLKEAV
QQLQEPDQDGQAANAVLQMLKPLYVEVPPETVAAGGLAAELPSADLDWLNTEDAVRAGRTESLSGSMTWIDAGIPEDEEE
PAELSAFATPATPSAPSSDLQQELPEPCCQLLHRSAGSLMVAIENTLSELGNALDEGLQDEDPAQYLTLKHQVLRGFLRD
VEGSAAMFMGILKKLEQSEWRLVQPLRVSNAKQALPEAVTEMPAELADPYASLRQVLASSELAQQKPQLEQEVMRLVQRS
VGSVKTAIEQALSELGKALDEQFQTCTLEEALVLKYQTLRAFLQEVGEISTKFAAFLDRMEEAERRLFGLV
>Mature_551_residues
MCYSAQQGTRPCSKTAKILVSLDPPTPAWQLPMVVSDPFGLVVQEVQQGGYADRVKKLVYFACTSTWESDVSKLNQIDLK
ALLEQLCRQHATLDALGQRFRDAISRINKKAEYARIAKMLLSKLQPLYQQPQADPSSPLMPSPKEPSAWAAPSPILSLEY
GSPRLQKQDYDPFELRAGVMRQTSPLRAKLVLFTALYHKIEPTLQGLAALRRHSLDELLRALYDACHSPQELETRLKEAV
QQLQEPDQDGQAANAVLQMLKPLYVEVPPETVAAGGLAAELPSADLDWLNTEDAVRAGRTESLSGSMTWIDAGIPEDEEE
PAELSAFATPATPSAPSSDLQQELPEPCCQLLHRSAGSLMVAIENTLSELGNALDEGLQDEDPAQYLTLKHQVLRGFLRD
VEGSAAMFMGILKKLEQSEWRLVQPLRVSNAKQALPEAVTEMPAELADPYASLRQVLASSELAQQKPQLEQEVMRLVQRS
VGSVKTAIEQALSELGKALDEQFQTCTLEEALVLKYQTLRAFLQEVGEISTKFAAFLDRMEEAERRLFGLV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60987; Mature: 60987

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA