Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86608760

Identifier: 86608760

GI number: 86608760

Start: 1339837

End: 1340559

Strand: Reverse

Name: 86608760

Synonym: CYB_1285

Alternate gene names: NA

Gene position: 1340559-1339837 (Counterclockwise)

Preceding gene: 86608765

Following gene: 86608759

Centisome position: 44.0

GC content: 59.89

Gene sequence:

>723_bases
GTGCGGCTGCAATTGCCGATGCTGGAGCGGATCAATCTGGGAGAATTGGAAAATGCCGAGGCCCGCAAAAACCGCAACAT
TGCCCTGGCCAATACGCTGGGGTGGCTGGGCTACCGCAACTTGGGGGCTTCCTGGCTGTGGCTGGAGCTGATCCAGTACT
ACGGGGATGCACCGGCTCGCACCCTGACTGGCTATGGCCTGGCCTACGACTACTTCGATCACATGCTGCGGCTGGATCCC
CATTTCCTCTTGGGCTACCGGCTCTCTAGTTTGGTGTTGGCCTATCGGGCCGGCCAGCCGGAAAAAGCCGTCGAGATTTT
GGATCGCGGCTTGCAGCAGTTCAACCCCCAAAACAACCCTGACGCCTGGCGACTCTACGTGGATCGTGCTCTACTTAACT
TTATGTTTCTGGGGGACGCGGAAGCGGGCCGCACCGATTACTACCAAGCTGCTGCCTGGCGAGAGCAGGTGGGCCTGCCT
GGAGATGAATTTCGCCAGTTGGGGGATAACATCGCCCGCAGTCCTCTCAGCCGCCGTTCCCAATTCGATGTTTGGCTGAG
CGTGTTTAACTCCACCACCGACCGGGATACCCGCCTGTACGTCCTGGAACAACTGGTCCAGTTGGGTACCGTGCTGCAAA
CGCTGCCTACGGGGGAGATCGAGATCCTGCCCCCTCCTCTGCCCGACTTCCCCGACGAGGAACCCTATCGCTTGCGCCTG
TGA

Upstream 100 bases:

>100_bases
TGCCATGACTGCTGCTTCCCTGCCCCGTCGCCGCTCTCGCTTCTCCCTGGCAGGCACTCTGGCCGCCGTTGGGGGAGCGT
TTCTGTTTGGGATCCTGGTG

Downstream 100 bases:

>100_bases
TTTGATCCGGGGGACAAAGATTGCGCCTTATGGCTGTGACGTTGCCCCAAAAGGTGAGCTAAACTCTAACCCAAATTAAG
CCGACCCCACGAGCCGACTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MRLQLPMLERINLGELENAEARKNRNIALANTLGWLGYRNLGASWLWLELIQYYGDAPARTLTGYGLAYDYFDHMLRLDP
HFLLGYRLSSLVLAYRAGQPEKAVEILDRGLQQFNPQNNPDAWRLYVDRALLNFMFLGDAEAGRTDYYQAAAWREQVGLP
GDEFRQLGDNIARSPLSRRSQFDVWLSVFNSTTDRDTRLYVLEQLVQLGTVLQTLPTGEIEILPPPLPDFPDEEPYRLRL

Sequences:

>Translated_240_residues
MRLQLPMLERINLGELENAEARKNRNIALANTLGWLGYRNLGASWLWLELIQYYGDAPARTLTGYGLAYDYFDHMLRLDP
HFLLGYRLSSLVLAYRAGQPEKAVEILDRGLQQFNPQNNPDAWRLYVDRALLNFMFLGDAEAGRTDYYQAAAWREQVGLP
GDEFRQLGDNIARSPLSRRSQFDVWLSVFNSTTDRDTRLYVLEQLVQLGTVLQTLPTGEIEILPPPLPDFPDEEPYRLRL
>Mature_240_residues
MRLQLPMLERINLGELENAEARKNRNIALANTLGWLGYRNLGASWLWLELIQYYGDAPARTLTGYGLAYDYFDHMLRLDP
HFLLGYRLSSLVLAYRAGQPEKAVEILDRGLQQFNPQNNPDAWRLYVDRALLNFMFLGDAEAGRTDYYQAAAWREQVGLP
GDEFRQLGDNIARSPLSRRSQFDVWLSVFNSTTDRDTRLYVLEQLVQLGTVLQTLPTGEIEILPPPLPDFPDEEPYRLRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27695; Mature: 27695

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLQLPMLERINLGELENAEARKNRNIALANTLGWLGYRNLGASWLWLELIQYYGDAPAR
CCCCCCHHHCCCCCCCCCCHHHHCCCEEEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCHH
TLTGYGLAYDYFDHMLRLDPHFLLGYRLSSLVLAYRAGQPEKAVEILDRGLQQFNPQNNP
HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
DAWRLYVDRALLNFMFLGDAEAGRTDYYQAAAWREQVGLPGDEFRQLGDNIARSPLSRRS
CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHH
QFDVWLSVFNSTTDRDTRLYVLEQLVQLGTVLQTLPTGEIEILPPPLPDFPDEEPYRLRL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEECC
>Mature Secondary Structure
MRLQLPMLERINLGELENAEARKNRNIALANTLGWLGYRNLGASWLWLELIQYYGDAPAR
CCCCCCHHHCCCCCCCCCCHHHHCCCEEEEHHHHHHHHHHCCHHHHHHHHHHHHCCCCHH
TLTGYGLAYDYFDHMLRLDPHFLLGYRLSSLVLAYRAGQPEKAVEILDRGLQQFNPQNNP
HHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
DAWRLYVDRALLNFMFLGDAEAGRTDYYQAAAWREQVGLPGDEFRQLGDNIARSPLSRRS
CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHH
QFDVWLSVFNSTTDRDTRLYVLEQLVQLGTVLQTLPTGEIEILPPPLPDFPDEEPYRLRL
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA