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The map label for this gene is ydcM [C]

Identifier: 86608736

GI number: 86608736

Start: 1316313

End: 1317548

Strand: Reverse

Name: ydcM [C]

Synonym: CYB_1259

Alternate gene names: 86608736

Gene position: 1317548-1316313 (Counterclockwise)

Preceding gene: 86608738

Following gene: 86608734

Centisome position: 43.25

GC content: 57.12

Gene sequence:

>1236_bases
ATGACCCAAGTCCTGGCCGTCTCCTGTAAGCTCAAGGTGTCCCAGTCGCAGGCCGCAAAGTTGGACGCGACCTTGGATGC
CTTTGTGCAGGCGTTGAACTGGGTCAACCAAAACACGCCCGAGAAAGTCACCAACGCCGTTAAACTTCAATCTCTGTGCT
ACCGCGAAATCCGTGCCCGGTTCGGCTTGTCCAGTAACTTGGCTCAGCAGGTCTGCAGACGGCTGGCCGGTGCCCGCAAG
GTTGCCCGACAGAAAAACCGCCCCGTCAAAGCGTTCAAGGGGGGCTTCGCGACCTATGACGCTCGTATCTTTTCGTTCCG
CGAGAAAGACTGGACGGTGTCGCTGACCACAGTGGAGGGTCGAGAGCGCTTTGAGCTGGCGATTGGCCGTTACCAGAGAG
AACAGTTGGCAGGCTCCAATCCCAAATCGGCCACTCTGGTCAAGCGCAGAGACGGCTCCTACTACATCCAGATTTGCGTA
GAGAAAAAGCCACCCAAGCAACAAGATACCGACAAGGTGATCGGGGTGGATTTGGGAAGGACAGATATTGCCCATACGTC
AGAGGGGGACAACTGGAATGGACAGCAGTTGAACAGAGTCCGAGACCACTACTCCCGGTTGAGGGCGGCACTCCAACGCA
AAGCCAGTAAGGGCACACGCAGTTCGCGGCGCAGATGCCGTCAACTGCTGCAACGGCTGTCTGGCAAGGAGAGACGCTTT
CAAACGTGGGTCAATCATCGCATCTCCAAAGCTATTGTCTCTAGGGCAAAGGCTACCAACAGCGCTATCGCCCTGGAAGA
CTTGACAGGGATCCGGGAAAGGGTCAATCAACAGCCACGCAGCAAAGCTGAACGGCGCAGGGCCAACAGTTGGGCGTTCT
ACCAGCTGAGGCAGTTTCTGGAATACAAGGCTCTGCGTGCAGGGGTTGCTTTGATTCTGGTGCCGCCTGCCTACACGTCG
CAGACCTGCCACCGGTGTTTGCACGTCCATCCCGATCCTACGCAATCCTATCGCAGTGGGAAGCAGTTCAAGTGTGGGCA
CTGTGGATGGGAAGGAGATGCGGATTTGAATGGTGCGAATGTGATTGCGCTTTGGTGCTCCGCACCGCTAACGCGACTGG
GGGCTGTCGTAAACCAGCCTAGAGGTTCGGGCCTGTTTTGTTCTCTGGTAGAGCAGAGCAGGCTCAGGGCTACTGAAAGC
CCGCTCCGTACCGCTTTAGCGGTCGGAGTCGGGTAG

Upstream 100 bases:

>100_bases
CCTGCTAAAGGAGCGCAAAATTTCAGCTAGAAATCGCAGGAGCCCCGCACTGTACCCGTAGGGTCAGTGTCGGGAGGAAT
GCGGAAGTTACGATAGAACC

Downstream 100 bases:

>100_bases
TTTACAGCCTCTATAGATTGCTGTAGCGTTCTTCGGCCCAGGGTTCACCGCCCATGTAGTAGCCGTTGCTCCCCCAAAAG
CCCAGCTGATCTTAGGGGGG

Product: ISSoc1, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MTQVLAVSCKLKVSQSQAAKLDATLDAFVQALNWVNQNTPEKVTNAVKLQSLCYREIRARFGLSSNLAQQVCRRLAGARK
VARQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRRDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
QTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRANSWAFYQLRQFLEYKALRAGVALILVPPAYTS
QTCHRCLHVHPDPTQSYRSGKQFKCGHCGWEGDADLNGANVIALWCSAPLTRLGAVVNQPRGSGLFCSLVEQSRLRATES
PLRTALAVGVG

Sequences:

>Translated_411_residues
MTQVLAVSCKLKVSQSQAAKLDATLDAFVQALNWVNQNTPEKVTNAVKLQSLCYREIRARFGLSSNLAQQVCRRLAGARK
VARQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRRDGSYYIQICV
EKKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
QTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRANSWAFYQLRQFLEYKALRAGVALILVPPAYTS
QTCHRCLHVHPDPTQSYRSGKQFKCGHCGWEGDADLNGANVIALWCSAPLTRLGAVVNQPRGSGLFCSLVEQSRLRATES
PLRTALAVGVG
>Mature_410_residues
TQVLAVSCKLKVSQSQAAKLDATLDAFVQALNWVNQNTPEKVTNAVKLQSLCYREIRARFGLSSNLAQQVCRRLAGARKV
ARQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEGRERFELAIGRYQREQLAGSNPKSATLVKRRDGSYYIQICVE
KKPPKQQDTDKVIGVDLGRTDIAHTSEGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRFQ
TWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRANSWAFYQLRQFLEYKALRAGVALILVPPAYTSQ
TCHRCLHVHPDPTQSYRSGKQFKCGHCGWEGDADLNGANVIALWCSAPLTRLGAVVNQPRGSGLFCSLVEQSRLRATESP
LRTALAVGVG

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=226, Percent_Identity=27.4336283185841, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46281; Mature: 46150

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVLAVSCKLKVSQSQAAKLDATLDAFVQALNWVNQNTPEKVTNAVKLQSLCYREIRAR
CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVARQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGRYQREQLAGSNPKSATLVKRRDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKALRAGVALILVPPAYTSQTCHRCLHVHPDPTQSYRSGKQFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCHHHHCCCCEECCCCCCCCCCCCCCCC
VIALWCSAPLTRLGAVVNQPRGSGLFCSLVEQSRLRATESPLRTALAVGVG
EEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQVLAVSCKLKVSQSQAAKLDATLDAFVQALNWVNQNTPEKVTNAVKLQSLCYREIRAR
CCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FGLSSNLAQQVCRRLAGARKVARQKNRPVKAFKGGFATYDARIFSFREKDWTVSLTTVEG
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHEEEECCCEEEEEEEECC
RERFELAIGRYQREQLAGSNPKSATLVKRRDGSYYIQICVEKKPPKQQDTDKVIGVDLGR
CHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEEEEECCC
TDIAHTSEGDNWNGQQLNRVRDHYSRLRAALQRKASKGTRSSRRRCRQLLQRLSGKERRF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH
QTWVNHRISKAIVSRAKATNSAIALEDLTGIRERVNQQPRSKAERRRANSWAFYQLRQFL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
EYKALRAGVALILVPPAYTSQTCHRCLHVHPDPTQSYRSGKQFKCGHCGWEGDADLNGAN
HHHHHHCCEEEEEECCCCCHHHHHHHHCCCCCCCHHHHCCCCEECCCCCCCCCCCCCCCC
VIALWCSAPLTRLGAVVNQPRGSGLFCSLVEQSRLRATESPLRTALAVGVG
EEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]