| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608681
Identifier: 86608681
GI number: 86608681
Start: 1248215
End: 1248994
Strand: Reverse
Name: 86608681
Synonym: CYB_1205
Alternate gene names: NA
Gene position: 1248994-1248215 (Counterclockwise)
Preceding gene: 86608682
Following gene: 86608679
Centisome position: 41.0
GC content: 60.13
Gene sequence:
>780_bases ATGCCGGTGATACACCTGTTTTGGGCTGAACTAAAGCGGGCCTGGATCCAGTACATTCGCTATCCGGCGGAGGCCCTGGG CGGGATCCTGATCACCACGTTCTTCTTCTATGCCCTCTTTGCCGGCGCCCAATATGTGGCAGGGCCTGCCTCCCAATTTG GCAAACGGCTGGACGCGGTGGTGATCGGCTATGTGCTCTGGACGCTGGTCATTTTTGTGGTGAACGACATCGCCCTCAAC CTGCAGGTGGAAGCCCAGACAGGCACCTTGGAGCAGGTGTTGCTCTCGCCATTTTCGGCAGCCACTCTCTTCTTGGCACG GGCTTGTGCCAGCTTGGTGTTGCGCTTTTCCATTGTCGTCGTCATTCTGGGCGTCATCTTATTGCTGACGGGCAGCCGGT TGCGGTTTCCCCCTGCTCTGGTGTTGCCTTTGGTGAGCGTGGTGCTGGGGGCCTACGGCTTCTCGTTTTTGCTGGGATCC GCCGCTCTGATTTGGAAGCGAATTCAGCAGCTTTTGATCATCAGCCAATTCGGCCTGCTTTTCCTGTTGGCTGCTCCCAC GGAAGAATGGCCGGGATCCCTGAGGTGGCTAGGGCAAAGTCTGCCCATGACGGCGGGGGCTGGGCTGCTGCGAGACGTGA TGGTGCGGGAGGCGGGCTTGGATCCCGTGCGGCTGATCATGGCTCTGACCAGCGGCGTTTTCTACTTCGGCCTGGGCTTG CTGACCTTTCGCCGGGCGGTTCGGGCAGCCAAGCGCCGAGGGATCCTGGGATCCCAGTAG
Upstream 100 bases:
>100_bases AGATCTTGAAGCCTTTGCCCTTGCTCAGCCTCAAACGAGAGGAAGCCGATCTCACCCATATTTTCCTCGAGTTGTTGAAA AGGGGAGAGGGGCAAGGATG
Downstream 100 bases:
>100_bases AGGTCTGCAGGAGGGCATCTAGAGCGAACGTTGGTTGGGGGAGCGGTGCAGCAGGTGAGGGAAGTGGTATTCTACCGCTC CAGTGACCGGGTTGTTTTCG
Product: ABC-2 type transporter, permease protein
Products: NA
Alternate protein names: ABC-2 Type Transporter Superfamily; ABC Polysaccharide/Polyol Phosphate Transporter; ABC Transporter Permease; ABC-2 Type Transporter Permease Protein; ABC-Type Transport System Permease Protein
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MPVIHLFWAELKRAWIQYIRYPAEALGGILITTFFFYALFAGAQYVAGPASQFGKRLDAVVIGYVLWTLVIFVVNDIALN LQVEAQTGTLEQVLLSPFSAATLFLARACASLVLRFSIVVVILGVILLLTGSRLRFPPALVLPLVSVVLGAYGFSFLLGS AALIWKRIQQLLIISQFGLLFLLAAPTEEWPGSLRWLGQSLPMTAGAGLLRDVMVREAGLDPVRLIMALTSGVFYFGLGL LTFRRAVRAAKRRGILGSQ
Sequences:
>Translated_259_residues MPVIHLFWAELKRAWIQYIRYPAEALGGILITTFFFYALFAGAQYVAGPASQFGKRLDAVVIGYVLWTLVIFVVNDIALN LQVEAQTGTLEQVLLSPFSAATLFLARACASLVLRFSIVVVILGVILLLTGSRLRFPPALVLPLVSVVLGAYGFSFLLGS AALIWKRIQQLLIISQFGLLFLLAAPTEEWPGSLRWLGQSLPMTAGAGLLRDVMVREAGLDPVRLIMALTSGVFYFGLGL LTFRRAVRAAKRRGILGSQ >Mature_258_residues PVIHLFWAELKRAWIQYIRYPAEALGGILITTFFFYALFAGAQYVAGPASQFGKRLDAVVIGYVLWTLVIFVVNDIALNL QVEAQTGTLEQVLLSPFSAATLFLARACASLVLRFSIVVVILGVILLLTGSRLRFPPALVLPLVSVVLGAYGFSFLLGSA ALIWKRIQQLLIISQFGLLFLLAAPTEEWPGSLRWLGQSLPMTAGAGLLRDVMVREAGLDPVRLIMALTSGVFYFGLGLL TFRRAVRAAKRRGILGSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28327; Mature: 28196
Theoretical pI: Translated: 10.77; Mature: 10.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVIHLFWAELKRAWIQYIRYPAEALGGILITTFFFYALFAGAQYVAGPASQFGKRLDAV CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHH VIGYVLWTLVIFVVNDIALNLQVEAQTGTLEQVLLSPFSAATLFLARACASLVLRFSIVV HHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH VILGVILLLTGSRLRFPPALVLPLVSVVLGAYGFSFLLGSAALIWKRIQQLLIISQFGLL HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLLAAPTEEWPGSLRWLGQSLPMTAGAGLLRDVMVREAGLDPVRLIMALTSGVFYFGLGL HHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LTFRRAVRAAKRRGILGSQ HHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PVIHLFWAELKRAWIQYIRYPAEALGGILITTFFFYALFAGAQYVAGPASQFGKRLDAV CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHH VIGYVLWTLVIFVVNDIALNLQVEAQTGTLEQVLLSPFSAATLFLARACASLVLRFSIVV HHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH VILGVILLLTGSRLRFPPALVLPLVSVVLGAYGFSFLLGSAALIWKRIQQLLIISQFGLL HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLLAAPTEEWPGSLRWLGQSLPMTAGAGLLRDVMVREAGLDPVRLIMALTSGVFYFGLGL HHHCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LTFRRAVRAAKRRGILGSQ HHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA