| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608679
Identifier: 86608679
GI number: 86608679
Start: 1247141
End: 1247623
Strand: Reverse
Name: 86608679
Synonym: CYB_1203
Alternate gene names: NA
Gene position: 1247623-1247141 (Counterclockwise)
Preceding gene: 86608681
Following gene: 86608678
Centisome position: 40.95
GC content: 56.73
Gene sequence:
>483_bases TTGTCATCTCCTGGCCTGGACGGGCAGAAGAGAACCGGCGTGATCTCTGCAAGCAAGCTGGGATCCCTTCTACGCTCTTG TCTGAGGGAGGGCAGCCTCAACGGGAAAACAACCGGAATAATGAGATCCAAGTCCCCCAGGCTCAAAGAACTCCGTCTCC CGCTCACGCAAGCAGTGGACATGCCTATAGAAGGCAAGGGAAAGTCGATGTTTGAGCCAATTTTAATCGGGTTGAGCGCT GTGCTCTGGGGCCTCCTCTGGGGCTACGCTACACTGCTGGTTGTGCTGGTGAACTTTAAGGAGCAAGGATCGGTTTACGC CTACCCTATGCAGGCGGTGCTGGATCGCTTTGTCGAATCCTTGGGGCTGGGCTGGCTTAAGGATCTGCATGCCCTGCAAC TGAGGCCGCTGCGCCGGATCAGCTATGCTCTGTTTGGTGCCGTCACCCTAGGGGTGGCTTTCATGCTCTGGGTGTTGGGG TGA
Upstream 100 bases:
>100_bases GGATATAGGCAGTACCGACAGACTTGGGTTCAGCGGGGGGCAGCAGGTAGCGAGAACTCATGGGGATTTGACGAGATAAC TCCGAGCGGGTACTTCCAGT
Downstream 100 bases:
>100_bases GGCGATGACCAGATCGACAGGCGCATTCCCGCAGCAACTGCAAATGCGTTAACCCAACCCGAGTTCTCGACAGGCTCATA ATGACCGCTGCCCAACTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 160; Mature: 159
Protein sequence:
>160_residues MSSPGLDGQKRTGVISASKLGSLLRSCLREGSLNGKTTGIMRSKSPRLKELRLPLTQAVDMPIEGKGKSMFEPILIGLSA VLWGLLWGYATLLVVLVNFKEQGSVYAYPMQAVLDRFVESLGLGWLKDLHALQLRPLRRISYALFGAVTLGVAFMLWVLG
Sequences:
>Translated_160_residues MSSPGLDGQKRTGVISASKLGSLLRSCLREGSLNGKTTGIMRSKSPRLKELRLPLTQAVDMPIEGKGKSMFEPILIGLSA VLWGLLWGYATLLVVLVNFKEQGSVYAYPMQAVLDRFVESLGLGWLKDLHALQLRPLRRISYALFGAVTLGVAFMLWVLG >Mature_159_residues SSPGLDGQKRTGVISASKLGSLLRSCLREGSLNGKTTGIMRSKSPRLKELRLPLTQAVDMPIEGKGKSMFEPILIGLSAV LWGLLWGYATLLVVLVNFKEQGSVYAYPMQAVLDRFVESLGLGWLKDLHALQLRPLRRISYALFGAVTLGVAFMLWVLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17505; Mature: 17374
Theoretical pI: Translated: 10.65; Mature: 10.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPGLDGQKRTGVISASKLGSLLRSCLREGSLNGKTTGIMRSKSPRLKELRLPLTQAVD CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHC MPIEGKGKSMFEPILIGLSAVLWGLLWGYATLLVVLVNFKEQGSVYAYPMQAVLDRFVES CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHH LGLGWLKDLHALQLRPLRRISYALFGAVTLGVAFMLWVLG HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SSPGLDGQKRTGVISASKLGSLLRSCLREGSLNGKTTGIMRSKSPRLKELRLPLTQAVD CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHC MPIEGKGKSMFEPILIGLSAVLWGLLWGYATLLVVLVNFKEQGSVYAYPMQAVLDRFVES CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHH LGLGWLKDLHALQLRPLRRISYALFGAVTLGVAFMLWVLG HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA