| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608653
Identifier: 86608653
GI number: 86608653
Start: 1214559
End: 1215359
Strand: Direct
Name: 86608653
Synonym: CYB_1177
Alternate gene names: NA
Gene position: 1214559-1215359 (Clockwise)
Preceding gene: 86608652
Following gene: 86608654
Centisome position: 39.86
GC content: 58.93
Gene sequence:
>801_bases ATGCACAAACACAGAAGCTTTGTAGCAGCATCTGTGATAGCCGGCAGTTTTGCTCTCTTGGGCTGTGGCAGCAGCACTTC GTCTTCGATGATGCCTTCCCAAGCGGATTTGGTGGCTTTGAGCGGCGGCAATCGCTTCACTTTCATCCGCTCTGCCGATG CCTTTGTGCAGGGATCCCTGACGGTAACAGGAGTGAACGGCAGCCTCATTGGTGTCGATGTGCGCCCTGCCAACCGGCTG CTTTACGGGCTGACCGACACCAGCATCCTTTACACCATCAACTTGCAGACCAGTGCTGCTACCGTAGCCAGTACCCTGTC AGCGCCCTTTACGGCGGGCATGCTTTCTGGCATGGATTTCAACCCTGTTCCGGATCGGCTGCGCTTGGTGGGAGCCAATG GCCAGAACTTCCGCATCAATGTGGATACGGGCGAAGTGATCCAAGATAGACCTTTGGCCTTTGGCCCAATGGAACTACGG GGATCCCAGCCGGCCATCACCGCCGCCGCCTACACCAACAATGTGGCGGGTGCCCAATCCACGCGGCTGCTGAACATCGA CGGGCAACGGAACCTGCTGGTGTTGCAGAATCCCCCCAACGATGGGGTTCAGGTGCCCATTGGCCCCCTGGGGGTGAACT TCGGCCCTATGGGTGGGTTTGACATCCGTACTGCTGATGGAGTGGATACCGGCTTTGCCATCGGCGGCTCCACCTTGTAT CGAATTGACCTAAACACCGGTCGGGCCACATCCCTGGGCACCCTGCCGGGTGGGCCGTTCTTTGGCTTGGCCGCCCTCTA G
Upstream 100 bases:
>100_bases GTTTTCACTGCAGCGCTTTGCAGCCACAGGCTCTGTGGTTTAGGGGGGCTTGTCTGTCAGTGGTTTTGATGGTTTGTCGA TCTTTTGAGGAGCCTGTTCA
Downstream 100 bases:
>100_bases GAAAGCCGATTCCCATTTGCCTATCTAAATCAAGGTTAATCAACATTAATCAATGTTTTGGATTCATTGATTTGGAACCA ATTGTTGGAATCGTTTTGAG
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 266; Mature: 266
Protein sequence:
>266_residues MHKHRSFVAASVIAGSFALLGCGSSTSSSMMPSQADLVALSGGNRFTFIRSADAFVQGSLTVTGVNGSLIGVDVRPANRL LYGLTDTSILYTINLQTSAATVASTLSAPFTAGMLSGMDFNPVPDRLRLVGANGQNFRINVDTGEVIQDRPLAFGPMELR GSQPAITAAAYTNNVAGAQSTRLLNIDGQRNLLVLQNPPNDGVQVPIGPLGVNFGPMGGFDIRTADGVDTGFAIGGSTLY RIDLNTGRATSLGTLPGGPFFGLAAL
Sequences:
>Translated_266_residues MHKHRSFVAASVIAGSFALLGCGSSTSSSMMPSQADLVALSGGNRFTFIRSADAFVQGSLTVTGVNGSLIGVDVRPANRL LYGLTDTSILYTINLQTSAATVASTLSAPFTAGMLSGMDFNPVPDRLRLVGANGQNFRINVDTGEVIQDRPLAFGPMELR GSQPAITAAAYTNNVAGAQSTRLLNIDGQRNLLVLQNPPNDGVQVPIGPLGVNFGPMGGFDIRTADGVDTGFAIGGSTLY RIDLNTGRATSLGTLPGGPFFGLAAL >Mature_266_residues MHKHRSFVAASVIAGSFALLGCGSSTSSSMMPSQADLVALSGGNRFTFIRSADAFVQGSLTVTGVNGSLIGVDVRPANRL LYGLTDTSILYTINLQTSAATVASTLSAPFTAGMLSGMDFNPVPDRLRLVGANGQNFRINVDTGEVIQDRPLAFGPMELR GSQPAITAAAYTNNVAGAQSTRLLNIDGQRNLLVLQNPPNDGVQVPIGPLGVNFGPMGGFDIRTADGVDTGFAIGGSTLY RIDLNTGRATSLGTLPGGPFFGLAAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27466; Mature: 27466
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKHRSFVAASVIAGSFALLGCGSSTSSSMMPSQADLVALSGGNRFTFIRSADAFVQGSL CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCEEECCE TVTGVNGSLIGVDVRPANRLLYGLTDTSILYTINLQTSAATVASTLSAPFTAGMLSGMDF EEEECCCEEEEEEECCCCEEEEEECCCEEEEEEEECCCHHHHHHHHCCCHHHHHHCCCCC NPVPDRLRLVGANGQNFRINVDTGEVIQDRPLAFGPMELRGSQPAITAAAYTNNVAGAQS CCCCCEEEEEECCCCEEEEECCCCCEECCCCCEECCCEECCCCCEEEEEEECCCCCCCCC TRLLNIDGQRNLLVLQNPPNDGVQVPIGPLGVNFGPMGGFDIRTADGVDTGFAIGGSTLY EEEEEECCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCEEECCCEEE RIDLNTGRATSLGTLPGGPFFGLAAL EEECCCCCCEEECCCCCCCCEEEECC >Mature Secondary Structure MHKHRSFVAASVIAGSFALLGCGSSTSSSMMPSQADLVALSGGNRFTFIRSADAFVQGSL CCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCEEECCE TVTGVNGSLIGVDVRPANRLLYGLTDTSILYTINLQTSAATVASTLSAPFTAGMLSGMDF EEEECCCEEEEEEECCCCEEEEEECCCEEEEEEEECCCHHHHHHHHCCCHHHHHHCCCCC NPVPDRLRLVGANGQNFRINVDTGEVIQDRPLAFGPMELRGSQPAITAAAYTNNVAGAQS CCCCCEEEEEECCCCEEEEECCCCCEECCCCCEECCCEECCCCCEEEEEEECCCCCCCCC TRLLNIDGQRNLLVLQNPPNDGVQVPIGPLGVNFGPMGGFDIRTADGVDTGFAIGGSTLY EEEEEECCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCEEECCCEEE RIDLNTGRATSLGTLPGGPFFGLAAL EEECCCCCCEEECCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA