| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608650
Identifier: 86608650
GI number: 86608650
Start: 1212203
End: 1212730
Strand: Direct
Name: 86608650
Synonym: CYB_1174
Alternate gene names: NA
Gene position: 1212203-1212730 (Clockwise)
Preceding gene: 86608644
Following gene: 86608651
Centisome position: 39.79
GC content: 52.46
Gene sequence:
>528_bases ATGGCCTCTTCTGCTCGCTGCAGTACTCAGCCTGTCCCTGTTCACTGGGTCTTGATCTTCAGGGATCGATTGGGGCAGAG GGGGGTTGTTCTGGATAGTATCTATTACTCAGTGGGACGGTCTAAAGACAATCATATTCGCCTTTACGATCCCTGCGTCT CTCGGAAACACGCTTCCCTCATCCGCATCCCAGGTTCAGGGCCAACTGCACAGGGATCCCTGCAGTACAGCTACATGGTA TTCGATGGCAGTCCGGGATCCAGGCCCAGCACCAATGGCCTATTCGTCAACGGAAAACGGGTTTTGTCCCATCGCCTTCA GCTCCTAGATAAGATAAGGTTTGGGCCGAACGTAACAGCAATTGTGGAGACAACGGATCGACTCAGCCCGGAAACCCTAG CCAAGTTATTGCAGCCTCTGGATGCTGCTAGCTCTACATCCCCATCCACCTTTGATTTTAATAAAGACACGGAGCCGAAC CCGGAAAACCTGGCTCAGCCAGAGGAAGAGGATTTCACTGTTGCCTAA
Upstream 100 bases:
>100_bases AGCAGCTGCTGCTTTGGCCTTTAAGAGCTAAGTGACTACCCACCTTCATTGAGTTTCCCTTTTGTTGACACCAGCGACTC TAGGTGCAGCTTGATTCATC
Downstream 100 bases:
>100_bases GCCAACCCAACCAGTCTTCTGAATCCTCCTGTGCCCCCCATCCCACCTGCTCTGAGCGGCTACTGGCAAAATGCCTTTGA CCTAGAAGCCCATCTGGGAT
Product: FHA domain-containing protein
Products: NA
Alternate protein names: FHA Domain Containing Protein; Diguanylate Cyclase/Phosphodiesterase; FHA Domain Protein; Two-Component Sensor Histidine Kinase; Diguanylate Cyclase/Phosphodiesterase With PAS/PAC Sensor; GAF Sensor Signal Transduction Histidine Kinase; Vault Protein Inter-Alpha-Trypsin
Number of amino acids: Translated: 175; Mature: 174
Protein sequence:
>175_residues MASSARCSTQPVPVHWVLIFRDRLGQRGVVLDSIYYSVGRSKDNHIRLYDPCVSRKHASLIRIPGSGPTAQGSLQYSYMV FDGSPGSRPSTNGLFVNGKRVLSHRLQLLDKIRFGPNVTAIVETTDRLSPETLAKLLQPLDAASSTSPSTFDFNKDTEPN PENLAQPEEEDFTVA
Sequences:
>Translated_175_residues MASSARCSTQPVPVHWVLIFRDRLGQRGVVLDSIYYSVGRSKDNHIRLYDPCVSRKHASLIRIPGSGPTAQGSLQYSYMV FDGSPGSRPSTNGLFVNGKRVLSHRLQLLDKIRFGPNVTAIVETTDRLSPETLAKLLQPLDAASSTSPSTFDFNKDTEPN PENLAQPEEEDFTVA >Mature_174_residues ASSARCSTQPVPVHWVLIFRDRLGQRGVVLDSIYYSVGRSKDNHIRLYDPCVSRKHASLIRIPGSGPTAQGSLQYSYMVF DGSPGSRPSTNGLFVNGKRVLSHRLQLLDKIRFGPNVTAIVETTDRLSPETLAKLLQPLDAASSTSPSTFDFNKDTEPNP ENLAQPEEEDFTVA
Specific function: Unknown
COG id: COG1716
COG function: function code T; FOG: FHA domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19289; Mature: 19158
Theoretical pI: Translated: 8.23; Mature: 8.23
Prosite motif: PS50006 FHA_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSARCSTQPVPVHWVLIFRDRLGQRGVVLDSIYYSVGRSKDNHIRLYDPCVSRKHASL CCCCCCCCCCCCCEEEEEEEECCCCCCCEEHHHHHHHHCCCCCCCEEEECCCCCCCCCEE IRIPGSGPTAQGSLQYSYMVFDGSPGSRPSTNGLFVNGKRVLSHRLQLLDKIRFGPNVTA EEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEE IVETTDRLSPETLAKLLQPLDAASSTSPSTFDFNKDTEPNPENLAQPEEEDFTVA EEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHCCCCCCCCCCCC >Mature Secondary Structure ASSARCSTQPVPVHWVLIFRDRLGQRGVVLDSIYYSVGRSKDNHIRLYDPCVSRKHASL CCCCCCCCCCCCEEEEEEEECCCCCCCEEHHHHHHHHCCCCCCCEEEECCCCCCCCCEE IRIPGSGPTAQGSLQYSYMVFDGSPGSRPSTNGLFVNGKRVLSHRLQLLDKIRFGPNVTA EEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEE IVETTDRLSPETLAKLLQPLDAASSTSPSTFDFNKDTEPNPENLAQPEEEDFTVA EEECCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA