Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86608649

Identifier: 86608649

GI number: 86608649

Start: 1211146

End: 1211790

Strand: Reverse

Name: 86608649

Synonym: CYB_1173

Alternate gene names: NA

Gene position: 1211790-1211146 (Counterclockwise)

Preceding gene: 86608659

Following gene: 86608648

Centisome position: 39.77

GC content: 59.38

Gene sequence:

>645_bases
GTGACGGTGGAACACAAGCACATTCAGTTAGACAGTCGGCCCGTTGGCCTGAACACAGCCACCGGTACCATCAAAGCCCA
GTTGGACTTGCTACTGCTGGGGTTGGAGTCCCTGAGCGGAGAAAGTTCCGAAGCGGTTCTGGCCGCAGCCAAAGCCCTCA
ACTTGGAAGAGCAGATTGGCGATCGGGTGACTCTCTGGCGACTGCGCAATGCTAACCCCTTGCGCCGCAGCAGCGGTGGG
CGCAAAAAGGTCGATATCGAAGAGGCCCGCGCCCTGGTGATGGTGATTGCCTATCTGGCTGCTCAGCAACAAGCCCGTAT
CCGCAGCACCTTGGAGCAACTGGAAGCCGCTGTCGATCAAGAGCTCAGCCCCTTCCGTCAGCCGCTGGTGGGAGATTACT
TGGATGAATTCCTCTCTCACTACCGCAGCCGCATGGTGGATGGGGACGTGCGCGATGAGAATAGCCTCACCGAGCTGGCC
CTGCGCATCTTGATTGAGCTGATGTTCTACAGTAGCCCGAAAGGCGCTCAGCGCCTGTGGAAAGCCTTGCTCAGCCGTCC
TGAGATGGATTTGCCTGCCGGCAGCGATCTGGAAGAAGAGGGGGTAGCCCACAGCTCCGGCCCCGATGCCTCACCCTCTT
CTTGA

Upstream 100 bases:

>100_bases
CCAAAGTCTTTTAGACTAGAGCGCAGGGAGGTAGGTTGCAGGTTTGGCTTGGACAGGAGATCATAGAGTTTCGTCGAAAC
CCAAAGCTCCCATTGACAGC

Downstream 100 bases:

>100_bases
GGCAGGTTCGTCAATTATCACCTCTGTTATCGCCTTTGTAGCCCTCTACCCGTGTTGTTTGCCCGCAGTTGCCATGCCCA
ACCTTACCCTGGTTAGCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MTVEHKHIQLDSRPVGLNTATGTIKAQLDLLLLGLESLSGESSEAVLAAAKALNLEEQIGDRVTLWRLRNANPLRRSSGG
RKKVDIEEARALVMVIAYLAAQQQARIRSTLEQLEAAVDQELSPFRQPLVGDYLDEFLSHYRSRMVDGDVRDENSLTELA
LRILIELMFYSSPKGAQRLWKALLSRPEMDLPAGSDLEEEGVAHSSGPDASPSS

Sequences:

>Translated_214_residues
MTVEHKHIQLDSRPVGLNTATGTIKAQLDLLLLGLESLSGESSEAVLAAAKALNLEEQIGDRVTLWRLRNANPLRRSSGG
RKKVDIEEARALVMVIAYLAAQQQARIRSTLEQLEAAVDQELSPFRQPLVGDYLDEFLSHYRSRMVDGDVRDENSLTELA
LRILIELMFYSSPKGAQRLWKALLSRPEMDLPAGSDLEEEGVAHSSGPDASPSS
>Mature_213_residues
TVEHKHIQLDSRPVGLNTATGTIKAQLDLLLLGLESLSGESSEAVLAAAKALNLEEQIGDRVTLWRLRNANPLRRSSGGR
KKVDIEEARALVMVIAYLAAQQQARIRSTLEQLEAAVDQELSPFRQPLVGDYLDEFLSHYRSRMVDGDVRDENSLTELAL
RILIELMFYSSPKGAQRLWKALLSRPEMDLPAGSDLEEEGVAHSSGPDASPSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23588; Mature: 23457

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVEHKHIQLDSRPVGLNTATGTIKAQLDLLLLGLESLSGESSEAVLAAAKALNLEEQIG
CCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHC
DRVTLWRLRNANPLRRSSGGRKKVDIEEARALVMVIAYLAAQQQARIRSTLEQLEAAVDQ
CCEEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELSPFRQPLVGDYLDEFLSHYRSRMVDGDVRDENSLTELALRILIELMFYSSPKGAQRLW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
KALLSRPEMDLPAGSDLEEEGVAHSSGPDASPSS
HHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TVEHKHIQLDSRPVGLNTATGTIKAQLDLLLLGLESLSGESSEAVLAAAKALNLEEQIG
CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHC
DRVTLWRLRNANPLRRSSGGRKKVDIEEARALVMVIAYLAAQQQARIRSTLEQLEAAVDQ
CCEEEEEECCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELSPFRQPLVGDYLDEFLSHYRSRMVDGDVRDENSLTELALRILIELMFYSSPKGAQRLW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
KALLSRPEMDLPAGSDLEEEGVAHSSGPDASPSS
HHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA