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The map label for this gene is rbpA [H]

Identifier: 86608641

GI number: 86608641

Start: 1203779

End: 1204063

Strand: Reverse

Name: rbpA [H]

Synonym: CYB_1165

Alternate gene names: 86608641

Gene position: 1204063-1203779 (Counterclockwise)

Preceding gene: 86608642

Following gene: 86608638

Centisome position: 39.52

GC content: 56.14

Gene sequence:

>285_bases
ATGACCATTTTTGTAGGTAATTTGTCCTTCAAGGCCAGCGAAGAAGACCTGCGGCTTGTGTTCGCCGAATACGGCACCGT
TAAGCAAATTAAGCTGCCGGTGGATCGGGAGACTGGCCGTAAGCGAGGTTTTGCCTTTGTGGAACTGGAAAACGAAGCCG
ATGAGCAAAAGGCCATCGACGAGCTGGACGGTGCTACTTGGATGGGCCGGGATCTGAGGGTCAACAAGGCGTTGCCTCGG
CAGACCAGCGCAGGCGGTCGGGATGGCCGCTCTTCCCGCTTTTGA

Upstream 100 bases:

>100_bases
CTAAGATGTGGTTGGCATGAGGTTCGGATTGAGCGAATGGTTTAACCAGGTGAGCCTCCGAACTGAACGCTAAAGGGTAA
GGTTCGGAGTTTGCTACACC

Downstream 100 bases:

>100_bases
GTTAACATGCATCTACCCTTCCTCAGATGAGGTTTGAGCCAGGGATCCCAACCCGCGATCCCTGGTTTCTAGCGCGTTCC
TGAGAACACTCTGCCCAGAA

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MTIFVGNLSFKASEEDLRLVFAEYGTVKQIKLPVDRETGRKRGFAFVELENEADEQKAIDELDGATWMGRDLRVNKALPR
QTSAGGRDGRSSRF

Sequences:

>Translated_94_residues
MTIFVGNLSFKASEEDLRLVFAEYGTVKQIKLPVDRETGRKRGFAFVELENEADEQKAIDELDGATWMGRDLRVNKALPR
QTSAGGRDGRSSRF
>Mature_93_residues
TIFVGNLSFKASEEDLRLVFAEYGTVKQIKLPVDRETGRKRGFAFVELENEADEQKAIDELDGATWMGRDLRVNKALPRQ
TSAGGRDGRSSRF

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI47271443, Length=76, Percent_Identity=43.421052631579, Blast_Score=69, Evalue=9e-13,
Organism=Homo sapiens, GI4502847, Length=75, Percent_Identity=42.6666666666667, Blast_Score=68, Evalue=2e-12,
Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=39.4736842105263, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI14719414, Length=79, Percent_Identity=37.9746835443038, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI37574731, Length=79, Percent_Identity=37.9746835443038, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=39.4736842105263, Blast_Score=66, Evalue=7e-12,
Organism=Homo sapiens, GI5174637, Length=84, Percent_Identity=36.9047619047619, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI45439316, Length=84, Percent_Identity=36.9047619047619, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI310118284, Length=105, Percent_Identity=38.0952380952381, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI303305009, Length=84, Percent_Identity=36.9047619047619, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI15055543, Length=77, Percent_Identity=41.5584415584416, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=45.4545454545455, Blast_Score=82, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=45.1219512195122, Blast_Score=82, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=42.8571428571429, Blast_Score=78, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=40.7894736842105, Blast_Score=66, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6321599, Length=82, Percent_Identity=35.3658536585366, Blast_Score=62, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17137710, Length=81, Percent_Identity=38.2716049382716, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582417, Length=80, Percent_Identity=36.25, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI45550943, Length=80, Percent_Identity=36.25, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582419, Length=80, Percent_Identity=36.25, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582423, Length=80, Percent_Identity=36.25, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582421, Length=80, Percent_Identity=36.25, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=41.025641025641, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI19920866, Length=80, Percent_Identity=36.25, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582412, Length=80, Percent_Identity=36.25, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21358099, Length=77, Percent_Identity=41.5584415584416, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10595; Mature: 10464

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIFVGNLSFKASEEDLRLVFAEYGTVKQIKLPVDRETGRKRGFAFVELENEADEQKAID
CEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHH
ELDGATWMGRDLRVNKALPRQTSAGGRDGRSSRF
HCCCCEECCCCEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TIFVGNLSFKASEEDLRLVFAEYGTVKQIKLPVDRETGRKRGFAFVELENEADEQKAID
EEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHH
ELDGATWMGRDLRVNKALPRQTSAGGRDGRSSRF
HCCCCEECCCCEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704138; 8590279; 8905231 [H]