| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608179
Identifier: 86608179
GI number: 86608179
Start: 710394
End: 711914
Strand: Reverse
Name: 86608179
Synonym: CYB_0693
Alternate gene names: NA
Gene position: 711914-710394 (Counterclockwise)
Preceding gene: 86608180
Following gene: 86608174
Centisome position: 23.37
GC content: 63.25
Gene sequence:
>1521_bases ATGTTAAATTTCTGGGTTCGGCGGGACGGCCAGGAAGACTGGCAGCCAGTACCAGCCGAGGGAGCAGTTCTGGAAGAAGA TACCTACACCATTGTTGCCCGTTCGCCCCAGCCCCACTTCACCATCACGGTGGAAGTCCGGCAGCGTCCTCTAGGGCCAC AGAATCAGGGCCCCAACACCGGCACGACTCCTCCACAGGTCCAAACCCGTTCTGTGCGCACCAACGATGAAGGGATCGGC ATTATTTTGCCTGCCAGCCGCCTCACCCCTGGGTTTTGGGAATTGCACTGCCGAGATGCCGACTTGATCGCAGAACTGTT CGGTGAAACCGAGTTGGACAATTGTCTCCGTTTTCAGGTTGTGCCTGCCCCTCTGGAGCCGGAACGAGGGATCCCTGCCC CGGTGGCTGAAGAGGCCGGGTTTGAGCCCCCCCAGAAAAAAGAGGTCGCCATCCCGCCAGAGCTGTTTTCCCTAATGCAC AGTGAATTGGAGGGATCCCCGGAGGAGGTGCTGGTGTTGACGGGGCGGATCGGCTGCAGCGGCGAGCTGCGGGTACAGGT TTGGCCAGAAGGGGAGGAGAGGCCGCTTTTCCAGGGACAACGGCAAATTCAACTCCCGGCGGGGGCGCGGACGGCGGTGT TCAGCATCCCCATCACCCTGCCCAGCCAAGTGTGGGCCCGTCCTTTACGGGGAGAACTGGCCCTTACTCCCTCCTCCTGG TGGGATCCAGAGCCGTCGCCTCAGACCCTGACCATCCCCTTTTCCATTCGCTGTCGCAGCCAAGAGGCAGGACTTCTTGG CGCAGGGATCCCCCTCCCGCAGCAGCAAGAGGAAGAGAGGCTGGCCGATGCTGCCAGTCCTGCCTCGACCGCAACCCTGC TCTCTCCCGAACGAACCTTGCAAAAGCTGCTGCGCATCTGGCAGCACAGTGCTCCTGCTGGAGGGGATCCCGGCTCGACT CAGCCGGCAGAGCCCTCTGCTAAGGCCGCACCCGAACCTAACCCCCAGCCTGCGGCGCCGATTTCCCCTCTTCCCTCACC CCCCCAAGCTGAGCCAATGGGCGAGGATGCCGCCCTGCCAGCCCCAGCAGGGAGCCCGGCCACCCCACCTCCGCCTGCAT TCGCCCTGCCTGCCACCAGCAAGGACACCAAAAACTCGCCCCCGCCGCCAGAAGTGTGCCCGGCGCCACAACTGCTGGTG CCTGAGCAATTGCGAGCGGGCGACAATTTCGATGTGGTGCTGCGTTTGCCGGCCTTGGCCCCTGCCTCCGCCGCCGGCGC CGCCTCCCAGCCACCTTATTGGATCAAGTTTTGGGTCAAGCATGGCCGCACTCGCTCTTTGGTGGATGGCCCCCGTTGGT TGCTGGACTTCTCCCGTGACGAGCAGGGGCAGTGGCAAGCCCTCACCCGCATGACCATCCCTCCCGGAGTCCCTGAGCTG ATCTTTGAAGCTTGGGCCGTCAGCCCGGATCGTCAGCAGCAGAGTGACCGAGTTACAGAGCGCCGCTCCATACTGCCTTG A
Upstream 100 bases:
>100_bases TGCCTACAGGGCAACAGCAAACCCTTTTGCAAGCCGATCTGGTTAAGTATCTGGCATCCCATTCGGGTCAGCAGTGCGGA GCACCTAAGGTGATGGAGCT
Downstream 100 bases:
>100_bases AGCCTGGCTCAGTCGCTGTCTTGGACGGAACGCACCATCAGCACGGGGCAGCCGATGTGAACCCGCACATAGTCAGAGAT GGAACGCCCCAACAGCCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 506; Mature: 506
Protein sequence:
>506_residues MLNFWVRRDGQEDWQPVPAEGAVLEEDTYTIVARSPQPHFTITVEVRQRPLGPQNQGPNTGTTPPQVQTRSVRTNDEGIG IILPASRLTPGFWELHCRDADLIAELFGETELDNCLRFQVVPAPLEPERGIPAPVAEEAGFEPPQKKEVAIPPELFSLMH SELEGSPEEVLVLTGRIGCSGELRVQVWPEGEERPLFQGQRQIQLPAGARTAVFSIPITLPSQVWARPLRGELALTPSSW WDPEPSPQTLTIPFSIRCRSQEAGLLGAGIPLPQQQEEERLADAASPASTATLLSPERTLQKLLRIWQHSAPAGGDPGST QPAEPSAKAAPEPNPQPAAPISPLPSPPQAEPMGEDAALPAPAGSPATPPPPAFALPATSKDTKNSPPPPEVCPAPQLLV PEQLRAGDNFDVVLRLPALAPASAAGAASQPPYWIKFWVKHGRTRSLVDGPRWLLDFSRDEQGQWQALTRMTIPPGVPEL IFEAWAVSPDRQQQSDRVTERRSILP
Sequences:
>Translated_506_residues MLNFWVRRDGQEDWQPVPAEGAVLEEDTYTIVARSPQPHFTITVEVRQRPLGPQNQGPNTGTTPPQVQTRSVRTNDEGIG IILPASRLTPGFWELHCRDADLIAELFGETELDNCLRFQVVPAPLEPERGIPAPVAEEAGFEPPQKKEVAIPPELFSLMH SELEGSPEEVLVLTGRIGCSGELRVQVWPEGEERPLFQGQRQIQLPAGARTAVFSIPITLPSQVWARPLRGELALTPSSW WDPEPSPQTLTIPFSIRCRSQEAGLLGAGIPLPQQQEEERLADAASPASTATLLSPERTLQKLLRIWQHSAPAGGDPGST QPAEPSAKAAPEPNPQPAAPISPLPSPPQAEPMGEDAALPAPAGSPATPPPPAFALPATSKDTKNSPPPPEVCPAPQLLV PEQLRAGDNFDVVLRLPALAPASAAGAASQPPYWIKFWVKHGRTRSLVDGPRWLLDFSRDEQGQWQALTRMTIPPGVPEL IFEAWAVSPDRQQQSDRVTERRSILP >Mature_506_residues MLNFWVRRDGQEDWQPVPAEGAVLEEDTYTIVARSPQPHFTITVEVRQRPLGPQNQGPNTGTTPPQVQTRSVRTNDEGIG IILPASRLTPGFWELHCRDADLIAELFGETELDNCLRFQVVPAPLEPERGIPAPVAEEAGFEPPQKKEVAIPPELFSLMH SELEGSPEEVLVLTGRIGCSGELRVQVWPEGEERPLFQGQRQIQLPAGARTAVFSIPITLPSQVWARPLRGELALTPSSW WDPEPSPQTLTIPFSIRCRSQEAGLLGAGIPLPQQQEEERLADAASPASTATLLSPERTLQKLLRIWQHSAPAGGDPGST QPAEPSAKAAPEPNPQPAAPISPLPSPPQAEPMGEDAALPAPAGSPATPPPPAFALPATSKDTKNSPPPPEVCPAPQLLV PEQLRAGDNFDVVLRLPALAPASAAGAASQPPYWIKFWVKHGRTRSLVDGPRWLLDFSRDEQGQWQALTRMTIPPGVPEL IFEAWAVSPDRQQQSDRVTERRSILP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55007; Mature: 55007
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNFWVRRDGQEDWQPVPAEGAVLEEDTYTIVARSPQPHFTITVEVRQRPLGPQNQGPNT CCCEEEECCCCCCCCCCCCCCCEEECCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCC GTTPPQVQTRSVRTNDEGIGIILPASRLTPGFWELHCRDADLIAELFGETELDNCLRFQV CCCCCCEEEEEEECCCCCEEEEEEHHHCCCCEEEEEECCHHHHHHHHCCCCCCCEEEEEE VPAPLEPERGIPAPVAEEAGFEPPQKKEVAIPPELFSLMHSELEGSPEEVLVLTGRIGCS ECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCC GELRVQVWPEGEERPLFQGQRQIQLPAGARTAVFSIPITLPSQVWARPLRGELALTPSSW CEEEEEECCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCHHHHHCCCCCCEEECCCCC WDPEPSPQTLTIPFSIRCRSQEAGLLGAGIPLPQQQEEERLADAASPASTATLLSPERTL CCCCCCCCEEEEEEEEEECCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHH QKLLRIWQHSAPAGGDPGSTQPAEPSAKAAPEPNPQPAAPISPLPSPPQAEPMGEDAALP HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APAGSPATPPPPAFALPATSKDTKNSPPPPEVCPAPQLLVPEQLRAGDNFDVVLRLPALA CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCC PASAAGAASQPPYWIKFWVKHGRTRSLVDGPRWLLDFSRDEQGQWQALTRMTIPPGVPEL CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCHHH IFEAWAVSPDRQQQSDRVTERRSILP HHHHHCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure MLNFWVRRDGQEDWQPVPAEGAVLEEDTYTIVARSPQPHFTITVEVRQRPLGPQNQGPNT CCCEEEECCCCCCCCCCCCCCCEEECCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCC GTTPPQVQTRSVRTNDEGIGIILPASRLTPGFWELHCRDADLIAELFGETELDNCLRFQV CCCCCCEEEEEEECCCCCEEEEEEHHHCCCCEEEEEECCHHHHHHHHCCCCCCCEEEEEE VPAPLEPERGIPAPVAEEAGFEPPQKKEVAIPPELFSLMHSELEGSPEEVLVLTGRIGCS ECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCC GELRVQVWPEGEERPLFQGQRQIQLPAGARTAVFSIPITLPSQVWARPLRGELALTPSSW CEEEEEECCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCHHHHHCCCCCCEEECCCCC WDPEPSPQTLTIPFSIRCRSQEAGLLGAGIPLPQQQEEERLADAASPASTATLLSPERTL CCCCCCCCEEEEEEEEEECCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHH QKLLRIWQHSAPAGGDPGSTQPAEPSAKAAPEPNPQPAAPISPLPSPPQAEPMGEDAALP HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APAGSPATPPPPAFALPATSKDTKNSPPPPEVCPAPQLLVPEQLRAGDNFDVVLRLPALA CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCC PASAAGAASQPPYWIKFWVKHGRTRSLVDGPRWLLDFSRDEQGQWQALTRMTIPPGVPEL CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCHHH IFEAWAVSPDRQQQSDRVTERRSILP HHHHHCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA