| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86608089
Identifier: 86608089
GI number: 86608089
Start: 606716
End: 608173
Strand: Reverse
Name: 86608089
Synonym: CYB_0597
Alternate gene names: NA
Gene position: 608173-606716 (Counterclockwise)
Preceding gene: 86608092
Following gene: 86608086
Centisome position: 19.96
GC content: 58.78
Gene sequence:
>1458_bases ATGAGCGGATTTGAGCTGCCTTTGACGGTGGAAGTGTTGCGTTGGTTAGCGGGCGGTCAGTTGGCCGAGCGCCTGGAGCG GGCCGTGCGCCTGTGGGTACTGCTCCACTGCCTCTATGGCGAAAACCGCTGGCCAGACCTGCCGGAAACCTTTGGCTACA CCCACATCCGGGATCGCTTGCTCTCACCACGGCACCCCAAGCAGGATCTGGCACAAGGGATCCCTTCACCCTGTCCTGAT GTTGACTGCATTTGCTGGAAACCCTTGAGGTTTTGGCTGAAGGATCCCAACCTATTGGCCGCCTTAAAAGTAGAAGTTCC GGATCTGGAAGCGCTGCTATCTGCCCGACCCTTTCACAAGACCCACCGCACCCTGCGCAAAGAGCTGGACTACCTGGCCG CCCAGGGTTGGCTGCAGCAAATTCAGGCCAACCCCAAGCGAAGAGACAACTTCCGCTGCTGCGCCCCAGGGGCTCATCCC CAGTTGCCGGCACCTTCATCCACTTGGACTCTATCGGGCAAGCAGCTTGAGCAGATTTATCACATCCTCAGCGATGTGGC CTTTGTGCATCCAGATGTCCAGGTTTTGCTGGATGAAATCTGGGCCAACCAAAGGACTCCGTCCCGCTGGCGCGATCAGC ACTCGCAGCGGCGGCTGTTTGTGTGGTTTGAGTACATCCTCTCGGACGAACAGCAAGAACGGGTGGATGAATATCAAAGC CAGCTAGAAGCCCTTTGGGCCAACCCAGAAGCAGGGGTGATCGGTTTTGACTACGCCACCCGCCAACATGGGATCCGACA CGTTCTCACTTACCCAGTCTGTTTGTTCTATGCCCGCCGCGCCAAGTATTTGGCAGCCTTTGGCCAGCTTCCCACCCCCG AAGGATCCCTGGGCTGGCACAATTTCCGCTTAGATCGGATCCAGTCTGAGCGCCTGGCGGTGATTCCCTGGGACGCTCCT TCCATTCCGCCAGAGCTGGCAATCCGCAAACGGCAAAAGAAGCTGCCCAGCCCAGAGGAAGTCCAAGCAGCATGGGAAGA AGCCTGGGGATCCGATTTTTACTTGCCCAAGGCATTGTTGATCCTTCGATTTTCCCCGGAGTTTGCCCGTCGCTATGTGG AAAGCACAGTGCGACATCCCACCTTCCAGCCCATTGCCTACGAGCGGATCCCGGCTTTGGTGCAGCAGGCAGTGGCGGAT GCGCGGGAGCGCGAACAGATTTTGAACATTGTCCGGCAAAGACCAACCAGCGACCGGTACTTCCGCGCCTGGGTACGGGT GGGAGATACCAATTTCACCATGCGCCTGCGGGATTGGCGGCCCAACGGCGAGGTCATCGCTCCCCTGGCCTACCGGGAAC AGATGGCTCGGGAAGCCCAGGCAGAGCTGCAGTTTTATCGCCCCGACGTAAACTACCCGGCTCCGACCGCTAAGCGGTAC GGAGCGGGCTTTCAGTAG
Upstream 100 bases:
>100_bases ATGTCAGAGTGGTCAGGCTCTCACTTGCGCCTTGCTCCAAGAAAACCCCTGGCCTGGAGTGCCATCAACTGGTTGACCTA AGAACCGAGGGAACTGTCGG
Downstream 100 bases:
>100_bases CCCTGAGCCTGTTCTGCTCTACCAGAGAACAAAACAAGCCCGGACCTCTAGGCTGGTTTACGACAGCCCCCAAGAGCGCA ATCACATTCGCACCATTCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 485; Mature: 484
Protein sequence:
>485_residues MSGFELPLTVEVLRWLAGGQLAERLERAVRLWVLLHCLYGENRWPDLPETFGYTHIRDRLLSPRHPKQDLAQGIPSPCPD VDCICWKPLRFWLKDPNLLAALKVEVPDLEALLSARPFHKTHRTLRKELDYLAAQGWLQQIQANPKRRDNFRCCAPGAHP QLPAPSSTWTLSGKQLEQIYHILSDVAFVHPDVQVLLDEIWANQRTPSRWRDQHSQRRLFVWFEYILSDEQQERVDEYQS QLEALWANPEAGVIGFDYATRQHGIRHVLTYPVCLFYARRAKYLAAFGQLPTPEGSLGWHNFRLDRIQSERLAVIPWDAP SIPPELAIRKRQKKLPSPEEVQAAWEEAWGSDFYLPKALLILRFSPEFARRYVESTVRHPTFQPIAYERIPALVQQAVAD AREREQILNIVRQRPTSDRYFRAWVRVGDTNFTMRLRDWRPNGEVIAPLAYREQMAREAQAELQFYRPDVNYPAPTAKRY GAGFQ
Sequences:
>Translated_485_residues MSGFELPLTVEVLRWLAGGQLAERLERAVRLWVLLHCLYGENRWPDLPETFGYTHIRDRLLSPRHPKQDLAQGIPSPCPD VDCICWKPLRFWLKDPNLLAALKVEVPDLEALLSARPFHKTHRTLRKELDYLAAQGWLQQIQANPKRRDNFRCCAPGAHP QLPAPSSTWTLSGKQLEQIYHILSDVAFVHPDVQVLLDEIWANQRTPSRWRDQHSQRRLFVWFEYILSDEQQERVDEYQS QLEALWANPEAGVIGFDYATRQHGIRHVLTYPVCLFYARRAKYLAAFGQLPTPEGSLGWHNFRLDRIQSERLAVIPWDAP SIPPELAIRKRQKKLPSPEEVQAAWEEAWGSDFYLPKALLILRFSPEFARRYVESTVRHPTFQPIAYERIPALVQQAVAD AREREQILNIVRQRPTSDRYFRAWVRVGDTNFTMRLRDWRPNGEVIAPLAYREQMAREAQAELQFYRPDVNYPAPTAKRY GAGFQ >Mature_484_residues SGFELPLTVEVLRWLAGGQLAERLERAVRLWVLLHCLYGENRWPDLPETFGYTHIRDRLLSPRHPKQDLAQGIPSPCPDV DCICWKPLRFWLKDPNLLAALKVEVPDLEALLSARPFHKTHRTLRKELDYLAAQGWLQQIQANPKRRDNFRCCAPGAHPQ LPAPSSTWTLSGKQLEQIYHILSDVAFVHPDVQVLLDEIWANQRTPSRWRDQHSQRRLFVWFEYILSDEQQERVDEYQSQ LEALWANPEAGVIGFDYATRQHGIRHVLTYPVCLFYARRAKYLAAFGQLPTPEGSLGWHNFRLDRIQSERLAVIPWDAPS IPPELAIRKRQKKLPSPEEVQAAWEEAWGSDFYLPKALLILRFSPEFARRYVESTVRHPTFQPIAYERIPALVQQAVADA REREQILNIVRQRPTSDRYFRAWVRVGDTNFTMRLRDWRPNGEVIAPLAYREQMAREAQAELQFYRPDVNYPAPTAKRYG AGFQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56595; Mature: 56464
Theoretical pI: Translated: 8.77; Mature: 8.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGFELPLTVEVLRWLAGGQLAERLERAVRLWVLLHCLYGENRWPDLPETFGYTHIRDRL CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHH LSPRHPKQDLAQGIPSPCPDVDCICWKPLRFWLKDPNLLAALKVEVPDLEALLSARPFHK CCCCCCHHHHHHCCCCCCCCCCCEEHHHHHHHHCCCCEEEEEEECCCCHHHHHCCCCHHH THRTLRKELDYLAAQGWLQQIQANPKRRDNFRCCAPGAHPQLPAPSSTWTLSGKQLEQIY HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCEEECHHHHHHHH HILSDVAFVHPDVQVLLDEIWANQRTPSRWRDQHSQRRLFVWFEYILSDEQQERVDEYQS HHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHH QLEALWANPEAGVIGFDYATRQHGIRHVLTYPVCLFYARRAKYLAAFGQLPTPEGSLGWH HHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NFRLDRIQSERLAVIPWDAPSIPPELAIRKRQKKLPSPEEVQAAWEEAWGSDFYLPKALL CEEHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHH ILRFSPEFARRYVESTVRHPTFQPIAYERIPALVQQAVADAREREQILNIVRQRPTSDRY HHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH FRAWVRVGDTNFTMRLRDWRPNGEVIAPLAYREQMAREAQAELQFYRPDVNYPAPTAKRY HHHHHEECCCCEEEEEECCCCCCCEECHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHC GAGFQ CCCCC >Mature Secondary Structure SGFELPLTVEVLRWLAGGQLAERLERAVRLWVLLHCLYGENRWPDLPETFGYTHIRDRL CCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHH LSPRHPKQDLAQGIPSPCPDVDCICWKPLRFWLKDPNLLAALKVEVPDLEALLSARPFHK CCCCCCHHHHHHCCCCCCCCCCCEEHHHHHHHHCCCCEEEEEEECCCCHHHHHCCCCHHH THRTLRKELDYLAAQGWLQQIQANPKRRDNFRCCAPGAHPQLPAPSSTWTLSGKQLEQIY HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCEEECHHHHHHHH HILSDVAFVHPDVQVLLDEIWANQRTPSRWRDQHSQRRLFVWFEYILSDEQQERVDEYQS HHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHH QLEALWANPEAGVIGFDYATRQHGIRHVLTYPVCLFYARRAKYLAAFGQLPTPEGSLGWH HHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NFRLDRIQSERLAVIPWDAPSIPPELAIRKRQKKLPSPEEVQAAWEEAWGSDFYLPKALL CEEHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHH ILRFSPEFARRYVESTVRHPTFQPIAYERIPALVQQAVADAREREQILNIVRQRPTSDRY HHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH FRAWVRVGDTNFTMRLRDWRPNGEVIAPLAYREQMAREAQAELQFYRPDVNYPAPTAKRY HHHHHEECCCCEEEEEECCCCCCCEECHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHC GAGFQ CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA