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The map label for this gene is ydcV [H]

Identifier: 86608037

GI number: 86608037

Start: 557377

End: 558180

Strand: Reverse

Name: ydcV [H]

Synonym: CYB_0545

Alternate gene names: 86608037

Gene position: 558180-557377 (Counterclockwise)

Preceding gene: 86608041

Following gene: 86608036

Centisome position: 18.32

GC content: 59.33

Gene sequence:

>804_bases
ATGCCGATTCGCCCTTTTCCCATCGGCCAATGGCTTTGGATCCTGTTCTCGCTGGGGGTGCTGCTCTTTCTCCATCTTCC
TCTGCTGGTGATCGTCCTTTACGCCTTTAGCCCCGATGAGGCGACTTTGCGCTTCCCTTTGCCGGGGCTGACCTGGCGTT
GGTTTGCCGTGGCCTGGGGGCGGGCCGATATTTGGCGGGCCTTGTTTTTGTCTTTGCGGGTGGCTGTGCTGGCTACCGGA
GTGGCGGTGGTGCTGGGATCCCTGGCGGCAGCAGCAGTCTATCGCAGCCGATTTTTTGGCCGCGAGACGATCTCGTTTTT
GGTGTTGCTGCCCATCGCCTTGCCGGGCATTGTCTCCGGGATCGCCTTGCGCTCGGCGATCCATTTGCTGCATATCCCTT
TCAGCTTTTGGACAATTGTTATCGGCCATGCCACCTTTTGCCTGGTGGTGGTGTACAACAACGTGCTGGCCCGGTTTCGC
CGCATGGGACGCTCTCAACTGGAGGCTTCTGCCGACTTGGGGGCCAATCCTCTGCAAACCTTTCGGTACATCCTTCTGCC
CGAACTGGCCTCGGCCCTATTGGCGGGATCCCTGCTGGCGTTTGCCCTGTCTTTCGATGAAATCATCGTCACCACCTTCA
CCGCTGGCCAGCAGCAAACCCTGCCGATTTGGGTGTTCAGCCAGCTCACCAAGCCTCGGCAGCGCCTGGTGATCAGCGTG
GTGGCTCTGGGGGTGATCGGCCTGACGGTGCTCCCTATTTGGCTGATCCATCACTTGACCCAAGAGAAAACCACGACTCG
CTGA

Upstream 100 bases:

>100_bases
TAAAGTCCTTGCCAAAAGCTGCTTCCCTACAAGGCTATTTCACAGACCATTTCTCTACCTGTAGACTGTTCCCCATCCGG
CTCTGTATTCTCCCTCATCC

Downstream 100 bases:

>100_bases
TGGCTCTTTCCAGCCTCATGCAAGGTTTGCACTTGGAGGGATCCCCAAGCATTGGCCGGAGTCGCTGTAACAGCAAGGAA
ACGCTGGCCCTGGTTGATCG

Product: polyamine/opine/phosphonate ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MPIRPFPIGQWLWILFSLGVLLFLHLPLLVIVLYAFSPDEATLRFPLPGLTWRWFAVAWGRADIWRALFLSLRVAVLATG
VAVVLGSLAAAAVYRSRFFGRETISFLVLLPIALPGIVSGIALRSAIHLLHIPFSFWTIVIGHATFCLVVVYNNVLARFR
RMGRSQLEASADLGANPLQTFRYILLPELASALLAGSLLAFALSFDEIIVTTFTAGQQQTLPIWVFSQLTKPRQRLVISV
VALGVIGLTVLPIWLIHHLTQEKTTTR

Sequences:

>Translated_267_residues
MPIRPFPIGQWLWILFSLGVLLFLHLPLLVIVLYAFSPDEATLRFPLPGLTWRWFAVAWGRADIWRALFLSLRVAVLATG
VAVVLGSLAAAAVYRSRFFGRETISFLVLLPIALPGIVSGIALRSAIHLLHIPFSFWTIVIGHATFCLVVVYNNVLARFR
RMGRSQLEASADLGANPLQTFRYILLPELASALLAGSLLAFALSFDEIIVTTFTAGQQQTLPIWVFSQLTKPRQRLVISV
VALGVIGLTVLPIWLIHHLTQEKTTTR
>Mature_266_residues
PIRPFPIGQWLWILFSLGVLLFLHLPLLVIVLYAFSPDEATLRFPLPGLTWRWFAVAWGRADIWRALFLSLRVAVLATGV
AVVLGSLAAAAVYRSRFFGRETISFLVLLPIALPGIVSGIALRSAIHLLHIPFSFWTIVIGHATFCLVVVYNNVLARFRR
MGRSQLEASADLGANPLQTFRYILLPELASALLAGSLLAFALSFDEIIVTTFTAGQQQTLPIWVFSQLTKPRQRLVISVV
ALGVIGLTVLPIWLIHHLTQEKTTTR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=249, Percent_Identity=58.6345381526104, Blast_Score=228, Evalue=3e-61,
Organism=Escherichia coli, GI1787368, Length=182, Percent_Identity=34.6153846153846, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1787081, Length=252, Percent_Identity=30.5555555555556, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29676; Mature: 29545

Theoretical pI: Translated: 11.67; Mature: 11.67

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIRPFPIGQWLWILFSLGVLLFLHLPLLVIVLYAFSPDEATLRFPLPGLTWRWFAVAWG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHC
RADIWRALFLSLRVAVLATGVAVVLGSLAAAAVYRSRFFGRETISFLVLLPIALPGIVSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
IALRSAIHLLHIPFSFWTIVIGHATFCLVVVYNNVLARFRRMGRSQLEASADLGANPLQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHH
FRYILLPELASALLAGSLLAFALSFDEIIVTTFTAGQQQTLPIWVFSQLTKPRQRLVISV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHCCHHHHHHHHH
VALGVIGLTVLPIWLIHHLTQEKTTTR
HHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PIRPFPIGQWLWILFSLGVLLFLHLPLLVIVLYAFSPDEATLRFPLPGLTWRWFAVAWG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHC
RADIWRALFLSLRVAVLATGVAVVLGSLAAAAVYRSRFFGRETISFLVLLPIALPGIVSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
IALRSAIHLLHIPFSFWTIVIGHATFCLVVVYNNVLARFRRMGRSQLEASADLGANPLQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHH
FRYILLPELASALLAGSLLAFALSFDEIIVTTFTAGQQQTLPIWVFSQLTKPRQRLVISV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHCCHHHHHHHHH
VALGVIGLTVLPIWLIHHLTQEKTTTR
HHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]