Click here to switch to the map view.

The map label for this gene is tnpA1 [H]

Identifier: 86608022

GI number: 86608022

Start: 544295

End: 544735

Strand: Reverse

Name: tnpA1 [H]

Synonym: CYB_0529

Alternate gene names: 86608022

Gene position: 544735-544295 (Counterclockwise)

Preceding gene: 86608024

Following gene: 86608017

Centisome position: 17.88

GC content: 48.07

Gene sequence:

>441_bases
ATGAAGCATGATTTTGTTTCCAGCGGCAGAGCTGTATCTGATTTGAAGGCGCACTTGGTCTTAACCACCAAGTACCGTCG
CAAGGTATTTACCAGCGAAATGCTGCAGCGATTACATGAAGTTATGTATGACCTTTGCCAAAAGTGGGGTTGCAAACTTA
TTGAGTTCAACGGCGAGGCAGACCATGTTCATCTGCTGTTCCAGTACTACCCGCAGGTGGATCTGTCCAAATTGGTAAAC
AACATCAAATCCGTCTCTAGTCGCAGGATGAGAAGCGAGTTTGCGGATTACATCAGCAAGATATACCGGAAAAATGTGCT
GTGGAATGAATCTTATTTCATCGCTTCATGTGGTGGGGTAACAGTCTCGGCATTGAGCCAGTACATTGAAAGCCAAGGTA
CTCCCGCCTCTCATCCCGACCCAAGCGCTCCGCGCCGCTAG

Upstream 100 bases:

>100_bases
GACTGGGCGTAGGCCGCAGGCGGTACTGATAGGCAGTCCTCATCTTAAGCGTACTCAGAAACCGCTACACTGATTATAGC
GCCAGCAGGGATTAGCGACC

Downstream 100 bases:

>100_bases
CACGTTCGCTTCAGCGGGCCGTAGGCCATACGTCCTACGGACAGAGGGCGGGGCTTCTCGGCGGTTTAGCTAAGGAGATC
TTTCGGTGCTGGGGTGGTAT

Product: ISSoc10, orfA transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MKHDFVSSGRAVSDLKAHLVLTTKYRRKVFTSEMLQRLHEVMYDLCQKWGCKLIEFNGEADHVHLLFQYYPQVDLSKLVN
NIKSVSSRRMRSEFADYISKIYRKNVLWNESYFIASCGGVTVSALSQYIESQGTPASHPDPSAPRR

Sequences:

>Translated_146_residues
MKHDFVSSGRAVSDLKAHLVLTTKYRRKVFTSEMLQRLHEVMYDLCQKWGCKLIEFNGEADHVHLLFQYYPQVDLSKLVN
NIKSVSSRRMRSEFADYISKIYRKNVLWNESYFIASCGGVTVSALSQYIESQGTPASHPDPSAPRR
>Mature_146_residues
MKHDFVSSGRAVSDLKAHLVLTTKYRRKVFTSEMLQRLHEVMYDLCQKWGCKLIEFNGEADHVHLLFQYYPQVDLSKLVN
NIKSVSSRRMRSEFADYISKIYRKNVLWNESYFIASCGGVTVSALSQYIESQGTPASHPDPSAPRR

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 16850; Mature: 16850

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHDFVSSGRAVSDLKAHLVLTTKYRRKVFTSEMLQRLHEVMYDLCQKWGCKLIEFNGEA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
DHVHLLFQYYPQVDLSKLVNNIKSVSSRRMRSEFADYISKIYRKNVLWNESYFIASCGGV
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCH
TVSALSQYIESQGTPASHPDPSAPRR
HHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKHDFVSSGRAVSDLKAHLVLTTKYRRKVFTSEMLQRLHEVMYDLCQKWGCKLIEFNGEA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
DHVHLLFQYYPQVDLSKLVNNIKSVSSRRMRSEFADYISKIYRKNVLWNESYFIASCGGV
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCH
TVSALSQYIESQGTPASHPDPSAPRR
HHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]