Click here to switch to the map view.

The map label for this gene is yfhL [C]

Identifier: 86607899

GI number: 86607899

Start: 415813

End: 417465

Strand: Reverse

Name: yfhL [C]

Synonym: CYB_0402

Alternate gene names: 86607899

Gene position: 417465-415813 (Counterclockwise)

Preceding gene: 86607900

Following gene: 86607897

Centisome position: 13.7

GC content: 55.29

Gene sequence:

>1653_bases
ATGGCTTATCAAATCTCAGGGAATTGTATCGGTTGCAACGCTTGCGTAGATAGCTGTCCTACAAAAGCTATTGTTGTCCA
GGATGGGGAATACTGGATTAATCCTCTGTTGTGCAATGACTGCGAAGGTTTCTTCCCAGAACCTCAGTGCGTTAGCCTGT
GTCCCGGTTCTGCCCCGCAGCCTTATGAAGCCATGAAGGGGCGCAACCGCACGGTCACGGCCCGCATTCGCAGCAGTCCA
CCTCTATTTTTGAACGGCCATAGCCAGGCTTTTGCTTCGTCAATTGTGGTCTGGGAAGCTTGCAATTTCCTATCTCAATT
TCAATCTCTCAATCTGCAAAAGCAGGGAGATAACCAGGTTTGCTATCAGAAATCTGTTGGCCACAACCAGGGATCTCTGA
CCCTAACTCTATGTTTGGACGGGATCCCACAAAGTGCTCCGATCGATGTGCGAACTGCCTGTTTGCATCTTATTTTTGCT
GCCTATGCCGCCGGGTTGGATAGCCCCTGGAAGGAATCCTTTGTTTTCACCGACTCACAATTGGAGTCCTATTTGGGCTG
GGATAAACGTAAAGATCTGAGCAAGATGACCCGTCTCCACCTGTTCATGACCTGGATAGAGCAGCTCTGTCGGATTCAAG
TCTCCATCGATTGGCCGGATCAGGGGCGGGTGAAGGGGTTTTCGGTACCGGCTGGCCCTCTGTGGAGGCTGCTCAAGATG
CATCGCCACTTTCAAAAAGATGAGCAGGGCTGCAACCATCTGGTGGGCCTGACTTGGGCGATTCAGCCCGGCGAATGGAC
ACGGTACTTTCTCAATCGACAAGGGTGCCGCCAGGGGCAAGCCTTTTATCAGTACAGCAGCCTGCCCCTATCCCTGCTGC
AGGCCGTGATGAGCCATTGGCAACACCATGAAGGAGCCATGCGCCTGCTGCTGTGGCTGTTGTTCAAAGTGAGGATGGGG
CGGCAACAGCGTCTGACGGTGCCCACCCTGATGCGAGTGGCCTACGGGGAAGAGCGACTGCAGGAAGCTTATCTCAATCT
CCAAGAACGCAAACGGCTGGTGCGCACCTTTGAAAGCGATCTGGAGGTTCTCAACCACTACGGCCTCAAGCCGGAGTTCG
ATCCCCTCACCTATCCTTCTTCCATTCAACCCCTGTGGGCTCGCCTGGAAGCTGTGCCCGAGGATGCGGACGAGGCATTG
AACTTTTGGATTGAAGATGCCAATAATGGCGGCCTGCTGACCGCTGCCGGGCCGCGGGGCAAGTGGGGACTCTTGATGCA
GGCTCGCATTCAACGATTTCATCTGCCCTCCGACTGGCATCGTCAAGCAGTTCAAGAAGCCAGATCCCCGACCCGAGAAT
CGGGATCCCGGCAGCGGCGTAGGGCAAAGTCTGCGCCTGTTGCAACAGACTCGGATCTCCCTGGCCCTCCCGAAAACCCA
AAAGACTTCCCCTCAAGCAAAGCTTTGCGTGGAGCGGATATCTCGGCGGCACGCCGGCAAAAGGGAATCAGCCAGCGGGA
ATTGGCCCAGAGGCTGGGGCGCAGCCAGAGCTGGGTGCGGGATGTAGAGAATGGGCGGCTTCAGATCAGCCTAAACGATC
GCCAGCGCCTTATCAAAGCCCTGTATTTGGATCCCAGGCAACAGCAAGTCTAG

Upstream 100 bases:

>100_bases
TGCGAGGAAGGTCTCCATGGCCGGGTTTAGGGTTTTGCAGATGCGATAGCAGGCGTGAACAAAGGAGAGCTACAGGGAAA
CGCTATGGAGTTCGAGGGCT

Downstream 100 bases:

>100_bases
GCCAGTCACTCAATTTGCTAATCCACCACTAATCCACGGCGATGACCACATCTGAGGCTTTAATGGCAGCATACGCTTCT
TTTCCAACTGCTATGCCCAA

Product: transcriptional regulator PatB

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Helix-Turn-Helix Domain Protein; Transcriptional Regulator PatB; 4Fe-4S Ferredoxin

Number of amino acids: Translated: 550; Mature: 549

Protein sequence:

>550_residues
MAYQISGNCIGCNACVDSCPTKAIVVQDGEYWINPLLCNDCEGFFPEPQCVSLCPGSAPQPYEAMKGRNRTVTARIRSSP
PLFLNGHSQAFASSIVVWEACNFLSQFQSLNLQKQGDNQVCYQKSVGHNQGSLTLTLCLDGIPQSAPIDVRTACLHLIFA
AYAAGLDSPWKESFVFTDSQLESYLGWDKRKDLSKMTRLHLFMTWIEQLCRIQVSIDWPDQGRVKGFSVPAGPLWRLLKM
HRHFQKDEQGCNHLVGLTWAIQPGEWTRYFLNRQGCRQGQAFYQYSSLPLSLLQAVMSHWQHHEGAMRLLLWLLFKVRMG
RQQRLTVPTLMRVAYGEERLQEAYLNLQERKRLVRTFESDLEVLNHYGLKPEFDPLTYPSSIQPLWARLEAVPEDADEAL
NFWIEDANNGGLLTAAGPRGKWGLLMQARIQRFHLPSDWHRQAVQEARSPTRESGSRQRRRAKSAPVATDSDLPGPPENP
KDFPSSKALRGADISAARRQKGISQRELAQRLGRSQSWVRDVENGRLQISLNDRQRLIKALYLDPRQQQV

Sequences:

>Translated_550_residues
MAYQISGNCIGCNACVDSCPTKAIVVQDGEYWINPLLCNDCEGFFPEPQCVSLCPGSAPQPYEAMKGRNRTVTARIRSSP
PLFLNGHSQAFASSIVVWEACNFLSQFQSLNLQKQGDNQVCYQKSVGHNQGSLTLTLCLDGIPQSAPIDVRTACLHLIFA
AYAAGLDSPWKESFVFTDSQLESYLGWDKRKDLSKMTRLHLFMTWIEQLCRIQVSIDWPDQGRVKGFSVPAGPLWRLLKM
HRHFQKDEQGCNHLVGLTWAIQPGEWTRYFLNRQGCRQGQAFYQYSSLPLSLLQAVMSHWQHHEGAMRLLLWLLFKVRMG
RQQRLTVPTLMRVAYGEERLQEAYLNLQERKRLVRTFESDLEVLNHYGLKPEFDPLTYPSSIQPLWARLEAVPEDADEAL
NFWIEDANNGGLLTAAGPRGKWGLLMQARIQRFHLPSDWHRQAVQEARSPTRESGSRQRRRAKSAPVATDSDLPGPPENP
KDFPSSKALRGADISAARRQKGISQRELAQRLGRSQSWVRDVENGRLQISLNDRQRLIKALYLDPRQQQV
>Mature_549_residues
AYQISGNCIGCNACVDSCPTKAIVVQDGEYWINPLLCNDCEGFFPEPQCVSLCPGSAPQPYEAMKGRNRTVTARIRSSPP
LFLNGHSQAFASSIVVWEACNFLSQFQSLNLQKQGDNQVCYQKSVGHNQGSLTLTLCLDGIPQSAPIDVRTACLHLIFAA
YAAGLDSPWKESFVFTDSQLESYLGWDKRKDLSKMTRLHLFMTWIEQLCRIQVSIDWPDQGRVKGFSVPAGPLWRLLKMH
RHFQKDEQGCNHLVGLTWAIQPGEWTRYFLNRQGCRQGQAFYQYSSLPLSLLQAVMSHWQHHEGAMRLLLWLLFKVRMGR
QQRLTVPTLMRVAYGEERLQEAYLNLQERKRLVRTFESDLEVLNHYGLKPEFDPLTYPSSIQPLWARLEAVPEDADEALN
FWIEDANNGGLLTAAGPRGKWGLLMQARIQRFHLPSDWHRQAVQEARSPTRESGSRQRRRAKSAPVATDSDLPGPPENPK
DFPSSKALRGADISAARRQKGISQRELAQRLGRSQSWVRDVENGRLQISLNDRQRLIKALYLDPRQQQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62618; Mature: 62487

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS50943 HTH_CROC1 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQISGNCIGCNACVDSCPTKAIVVQDGEYWINPLLCNDCEGFFPEPQCVSLCPGSAPQ
CEEEECCCEEEHHHHHHCCCCCEEEEECCCEEECCEEECCCCCCCCCCCCEEECCCCCCC
PYEAMKGRNRTVTARIRSSPPLFLNGHSQAFASSIVVWEACNFLSQFQSLNLQKQGDNQV
CHHHHCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
CYQKSVGHNQGSLTLTLCLDGIPQSAPIDVRTACLHLIFAAYAAGLDSPWKESFVFTDSQ
HHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCEEEEHHH
LESYLGWDKRKDLSKMTRLHLFMTWIEQLCRIQVSIDWPDQGRVKGFSVPAGPLWRLLKM
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCEECCCCCHHHHHHHHH
HRHFQKDEQGCNHLVGLTWAIQPGEWTRYFLNRQGCRQGQAFYQYSSLPLSLLQAVMSHW
HHHHHHHHHCCHHEEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHH
QHHEGAMRLLLWLLFKVRMGRQQRLTVPTLMRVAYGEERLQEAYLNLQERKRLVRTFESD
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
LEVLNHYGLKPEFDPLTYPSSIQPLWARLEAVPEDADEALNFWIEDANNGGLLTAAGPRG
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHEEECCCCCEEEECCCCC
KWGLLMQARIQRFHLPSDWHRQAVQEARSPTRESGSRQRRRAKSAPVATDSDLPGPPENP
CCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
KDFPSSKALRGADISAARRQKGISQRELAQRLGRSQSWVRDVENGRLQISLNDRQRLIKA
CCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCEEEEEECHHHHHHHH
LYLDPRQQQV
HHCCCHHCCC
>Mature Secondary Structure 
AYQISGNCIGCNACVDSCPTKAIVVQDGEYWINPLLCNDCEGFFPEPQCVSLCPGSAPQ
EEEECCCEEEHHHHHHCCCCCEEEEECCCEEECCEEECCCCCCCCCCCCEEECCCCCCC
PYEAMKGRNRTVTARIRSSPPLFLNGHSQAFASSIVVWEACNFLSQFQSLNLQKQGDNQV
CHHHHCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
CYQKSVGHNQGSLTLTLCLDGIPQSAPIDVRTACLHLIFAAYAAGLDSPWKESFVFTDSQ
HHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCEEEEHHH
LESYLGWDKRKDLSKMTRLHLFMTWIEQLCRIQVSIDWPDQGRVKGFSVPAGPLWRLLKM
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCEECCCCCHHHHHHHHH
HRHFQKDEQGCNHLVGLTWAIQPGEWTRYFLNRQGCRQGQAFYQYSSLPLSLLQAVMSHW
HHHHHHHHHCCHHEEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHH
QHHEGAMRLLLWLLFKVRMGRQQRLTVPTLMRVAYGEERLQEAYLNLQERKRLVRTFESD
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
LEVLNHYGLKPEFDPLTYPSSIQPLWARLEAVPEDADEALNFWIEDANNGGLLTAAGPRG
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHEEECCCCCEEEECCCCC
KWGLLMQARIQRFHLPSDWHRQAVQEARSPTRESGSRQRRRAKSAPVATDSDLPGPPENP
CCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
KDFPSSKALRGADISAARRQKGISQRELAQRLGRSQSWVRDVENGRLQISLNDRQRLIKA
CCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCEEEEEECHHHHHHHH
LYLDPRQQQV
HHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA