Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86607890

Identifier: 86607890

GI number: 86607890

Start: 408376

End: 408834

Strand: Reverse

Name: 86607890

Synonym: CYB_0392

Alternate gene names: NA

Gene position: 408834-408376 (Counterclockwise)

Preceding gene: 86607891

Following gene: 86607888

Centisome position: 13.42

GC content: 59.91

Gene sequence:

>459_bases
ATGAGCCAAGTTTGGAAGCCGGCGCAGTGGCTAACCCAAAAGCTGCGTCTTGTCTGCATGAGCTTTGGCTGTGTGGCATT
GGCGGCGCTCTTGCTGGGTTTTGGAGCCATCCCCCTGCAACTGAAGGATTTGCACCTCACCCCCTGCCCGGATACCCCCG
AATACACCAACCTGGTTACCAGCAACGGCAACCCCATACCGGCCAGGTGCCTATTCATTGAAGGCACGGTGGTCAACCGC
TCCAGAAATACTGTGCTGAATGCGGATGTCTTCGGTCGCCTTTACGATGCCAACGGCAATGAGGTTCTGCCGGAGCGCAC
CCGCCTGGGAGCCATCGAGGAGGTTCCCCCCGGCGAAAGCCCCTTCTCCATTCGCATCTCCGTGCCCGTGACCAGCCCGC
TGCCTCTGACTATGGAGCAGTTCAAAGCCAGCGGCTTCAGCGGCACCGTGCGCCGTTAA

Upstream 100 bases:

>100_bases
GATCCTTGGGATCAGCGCCTGGATGGGATCCAAACCGAGGAGAGGTTCTACGAGACGGGGATCCCCTAGACTAAAGAGGG
TGGGCCTTGGAGGAAAAACG

Downstream 100 bases:

>100_bases
AGCTGGCGGGTGAAGTCCACCTGGGCCGAGCGCCCCGGCAAATGGAGCTGGGCAACCACCGGCGGGGTTTGGGCGATCAG
CCGTCCCCGGCGGAAGACAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MSQVWKPAQWLTQKLRLVCMSFGCVALAALLLGFGAIPLQLKDLHLTPCPDTPEYTNLVTSNGNPIPARCLFIEGTVVNR
SRNTVLNADVFGRLYDANGNEVLPERTRLGAIEEVPPGESPFSIRISVPVTSPLPLTMEQFKASGFSGTVRR

Sequences:

>Translated_152_residues
MSQVWKPAQWLTQKLRLVCMSFGCVALAALLLGFGAIPLQLKDLHLTPCPDTPEYTNLVTSNGNPIPARCLFIEGTVVNR
SRNTVLNADVFGRLYDANGNEVLPERTRLGAIEEVPPGESPFSIRISVPVTSPLPLTMEQFKASGFSGTVRR
>Mature_151_residues
SQVWKPAQWLTQKLRLVCMSFGCVALAALLLGFGAIPLQLKDLHLTPCPDTPEYTNLVTSNGNPIPARCLFIEGTVVNRS
RNTVLNADVFGRLYDANGNEVLPERTRLGAIEEVPPGESPFSIRISVPVTSPLPLTMEQFKASGFSGTVRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16610; Mature: 16479

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVWKPAQWLTQKLRLVCMSFGCVALAALLLGFGAIPLQLKDLHLTPCPDTPEYTNLVT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEE
SNGNPIPARCLFIEGTVVNRSRNTVLNADVFGRLYDANGNEVLPERTRLGAIEEVPPGES
CCCCCCCEEEEEEECEEEECCCCEEEEHHHCEEEECCCCCEECCCHHHCCCCCCCCCCCC
PFSIRISVPVTSPLPLTMEQFKASGFSGTVRR
CEEEEEEECCCCCCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SQVWKPAQWLTQKLRLVCMSFGCVALAALLLGFGAIPLQLKDLHLTPCPDTPEYTNLVT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEE
SNGNPIPARCLFIEGTVVNRSRNTVLNADVFGRLYDANGNEVLPERTRLGAIEEVPPGES
CCCCCCCEEEEEEECEEEECCCCEEEEHHHCEEEECCCCCEECCCHHHCCCCCCCCCCCC
PFSIRISVPVTSPLPLTMEQFKASGFSGTVRR
CEEEEEEECCCCCCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA