| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607869
Identifier: 86607869
GI number: 86607869
Start: 385745
End: 388288
Strand: Reverse
Name: 86607869
Synonym: CYB_0372
Alternate gene names: NA
Gene position: 388288-385745 (Counterclockwise)
Preceding gene: 86607870
Following gene: 86607868
Centisome position: 12.74
GC content: 60.38
Gene sequence:
>2544_bases ATGCAGAGGTTGCGGCGAGGATTGTTTCTGCTGCTGGGGGTGGGGCTGGGGATCCTGGCCATCACGGGCTTGGCGGCTTT CTACGTAGATCTGGCTTGGTTTGCCGAGCTGCATGCTCTGCCGGTACTGTGGACGCGGGTAATTGCCCGCTGGGGGCTGG GCCTGGGCGCTTTCCTCTTTGCCCTGGCGGTGACGGGATCCAACATCTGCTCCTGCTGGCGGGGGGCAACCTTGGCTGGG GCCTGGGCGATTGCCACAGGTTTGAGTGTTTTCTTTGCTGGGTCTCTTTCCAATCACTGGTTCACGCTGTTGCTCTGGCT GAACCAGGGGCCCGTCGGGGAGTCGGATCCCATTTTCAACCGCGATCTCGGCTTTTTTCTCTTCAGCCTGCCTTTCTGGG AGACGCTGCAGCATTGGTGCTTCAACCTGGTGCTGCTCACCTTGATTGCCGTTGTCCTCATCTACTTGGTAGAGCTGGGG CTTTCCGAGCAACGGCTGACCTTGGCCCTTTCTCTCTATGCCCAGCGGCACTTGCTGATCCTGGGGGGATCCCTGTTTCT CATTCGCGCCTGGGGCCATTGGCTGGAGCGCTACGAGCTGCTCTATTCCACCCGCGGCGTTGTGTTTGGGGCCGGTTTTG CCGATGTGCATGCAACCTTGCCGGCCACGACCTTGATGAGCGGGGTGGCAGGCCTGACGGCGGTGGGATTCTGGGCTTTG GCTCGCCAGGGGATCCGCCTCAACCTTCCTTTCCTCAAGTCCTGGTGCCCTTCCTGGGCCAGCTCTCTCCTGGCGCCGGC CATCCTCTGGGGGGCCTACCTGGGGTTTGGGCTGCTAACCACCCAACTTTATCCCCAACTGGTGCAAACTTTCTTGGTCA CCCCCAACGAGCTGGAGCTGGAGCGCCCCTACATCGAGGACAACATCCGTTTTACCCGTGCTGGCTTTGGCCTGGCCGAT GTCGAAGTCCAACCCTTCCCGGAAGGGGGAGCCCTCACCTGGGAGATCCTGCAGCAGAATCAATCCACCCTGAGCAACGT GCGCCTCTGGGATGCGGATCCCCTATTGGCCACCTACCGCCAACTGCAAGAAATCCGCCCCTACTACCAATTTCCCTATG TGAATGTGGATCGCTACCGCATTGGGGGAGAATTGCGCCAAGTTATGCATGCCGCCCGCGAGCTGGACTTTGCCCAGGTA CCCCCCGCCGCCCAAACCTGGGTTAACCGGCGGTTTTTCTACACCCACGGCTATGGCCTCACCCTCAGCCCGGTGAATGT GGTGACCCCTGAAGGCCTGCCGGATTTTTTCCTATCGGATATCCCGCCGCGGGTTTCTCCCCGCTACCCTGAGGTGGCCT CCGTCTTGCGGGTGGAGCAGCCGGCCCTCTACTATGGCGAGCTGACCACCACCGATGTTTTCGTGGGCGCTGAGGCGCGG GAGTTGGACTACCCTGCAGCAGAGCGCTATGTGTACAGCAGCTACCGGGGCAGCGGTGGCGTGCCCATTCCCCACCTCTG GCAGCGGTTTCTCTACGCCTGGCATTTTGGCGATCTGCGCATCCTTCTCAGCCGCGAGCTATCTTCTGCCACCCGCTTTC TCTATCGCCGCCAAATCCGCGAGCGCATCCGTCGGGTGATGCCCTTTTTGCTCTACGACCGGGATCCCTACCTGGTCATT CAAGGCGGCAAGCTCTACTGGTTTTTCGATGCCTATACCACCAGCAGCCGCTACCCCTACTCGGAGCACCTGCCCGGCTT TCCCTTCAACTACATCCGCAACTCGGTCAAGGCGGTGATGGACGCCTACAACGGCAGCATCGATTGGTACATTGCCGACC CTCGGGATCCCCTCATCCAAGCCTACGCCCGCATCTACCCCACCCTCTTCAAGCCTCTGGAGGCAATGCCGGAGCCGCTG CGGCAACACATCCGCTATCCCCAAGACCTCTTCCGCCTGCAAGCGCAGCAGTTTGCCACCTACCACATGACGGATCCCCG CCTCTTCTACAACCGCGAGGATCAATGGCAGATCCCCGGCCAGTTCCGCAATCGACGGCGCATTCCCATGCAGCCGCAGT ATCTCATTCTCACCTTGCCGAGGGATCCCCAAGGGGTTGCAAACCACACTCCTGAGTTCGTCCTCCTCTCCCCCTATGCC CCTGTTAACAAGCAGAACATGGTGGCTTGGATAGCGGCCCGCTGCGACGGGGAAAACTACGGCAAGCTCCTGGTGTACGA GTTTTCCAAGCAACGGCTCATCTATGGCCCGGAACAGGTGGAAGCACGGGTCAATCAGGATCCCTTAATCTCCGAGCAAA TTTCCCTCTGGAACCAGCATGGGTCGCGGGTGAACCTGGGCACGCTGCTGGTCATTCCTATCGAGACTTCTTTGCTCTAT GTTCAGCCCCTTTACATCGAAGCAGAACAGGGCCGCTTGCCTCAGCTCACCCGGGTGATCGCTGCCTACGAAGACCGGGT GGTGATGGAACCGACTCTCGGCCAGGCCTTAGAAGCCCTCTTTCTGCCGAGGGGCAGCCGATAG
Upstream 100 bases:
>100_bases TATGCCTACGGCACCCTGTGTTGTTCCGCAACGCTCGGGCGAAGGGAAACTGCACCGCTGACGCGACCAAGAACAGCTTT GAGCCGAGGATCCTGAGGCG
Downstream 100 bases:
>100_bases AGAAAGGGATCCCCTCCTCATTTTTGAGGCAGGTAGTTGACGAAACTTAACGGATGTTTTAAGTTTAGGTTGTCAATCTT CGCGCTTCCTTAGGGAAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 847; Mature: 847
Protein sequence:
>847_residues MQRLRRGLFLLLGVGLGILAITGLAAFYVDLAWFAELHALPVLWTRVIARWGLGLGAFLFALAVTGSNICSCWRGATLAG AWAIATGLSVFFAGSLSNHWFTLLLWLNQGPVGESDPIFNRDLGFFLFSLPFWETLQHWCFNLVLLTLIAVVLIYLVELG LSEQRLTLALSLYAQRHLLILGGSLFLIRAWGHWLERYELLYSTRGVVFGAGFADVHATLPATTLMSGVAGLTAVGFWAL ARQGIRLNLPFLKSWCPSWASSLLAPAILWGAYLGFGLLTTQLYPQLVQTFLVTPNELELERPYIEDNIRFTRAGFGLAD VEVQPFPEGGALTWEILQQNQSTLSNVRLWDADPLLATYRQLQEIRPYYQFPYVNVDRYRIGGELRQVMHAARELDFAQV PPAAQTWVNRRFFYTHGYGLTLSPVNVVTPEGLPDFFLSDIPPRVSPRYPEVASVLRVEQPALYYGELTTTDVFVGAEAR ELDYPAAERYVYSSYRGSGGVPIPHLWQRFLYAWHFGDLRILLSRELSSATRFLYRRQIRERIRRVMPFLLYDRDPYLVI QGGKLYWFFDAYTTSSRYPYSEHLPGFPFNYIRNSVKAVMDAYNGSIDWYIADPRDPLIQAYARIYPTLFKPLEAMPEPL RQHIRYPQDLFRLQAQQFATYHMTDPRLFYNREDQWQIPGQFRNRRRIPMQPQYLILTLPRDPQGVANHTPEFVLLSPYA PVNKQNMVAWIAARCDGENYGKLLVYEFSKQRLIYGPEQVEARVNQDPLISEQISLWNQHGSRVNLGTLLVIPIETSLLY VQPLYIEAEQGRLPQLTRVIAAYEDRVVMEPTLGQALEALFLPRGSR
Sequences:
>Translated_847_residues MQRLRRGLFLLLGVGLGILAITGLAAFYVDLAWFAELHALPVLWTRVIARWGLGLGAFLFALAVTGSNICSCWRGATLAG AWAIATGLSVFFAGSLSNHWFTLLLWLNQGPVGESDPIFNRDLGFFLFSLPFWETLQHWCFNLVLLTLIAVVLIYLVELG LSEQRLTLALSLYAQRHLLILGGSLFLIRAWGHWLERYELLYSTRGVVFGAGFADVHATLPATTLMSGVAGLTAVGFWAL ARQGIRLNLPFLKSWCPSWASSLLAPAILWGAYLGFGLLTTQLYPQLVQTFLVTPNELELERPYIEDNIRFTRAGFGLAD VEVQPFPEGGALTWEILQQNQSTLSNVRLWDADPLLATYRQLQEIRPYYQFPYVNVDRYRIGGELRQVMHAARELDFAQV PPAAQTWVNRRFFYTHGYGLTLSPVNVVTPEGLPDFFLSDIPPRVSPRYPEVASVLRVEQPALYYGELTTTDVFVGAEAR ELDYPAAERYVYSSYRGSGGVPIPHLWQRFLYAWHFGDLRILLSRELSSATRFLYRRQIRERIRRVMPFLLYDRDPYLVI QGGKLYWFFDAYTTSSRYPYSEHLPGFPFNYIRNSVKAVMDAYNGSIDWYIADPRDPLIQAYARIYPTLFKPLEAMPEPL RQHIRYPQDLFRLQAQQFATYHMTDPRLFYNREDQWQIPGQFRNRRRIPMQPQYLILTLPRDPQGVANHTPEFVLLSPYA PVNKQNMVAWIAARCDGENYGKLLVYEFSKQRLIYGPEQVEARVNQDPLISEQISLWNQHGSRVNLGTLLVIPIETSLLY VQPLYIEAEQGRLPQLTRVIAAYEDRVVMEPTLGQALEALFLPRGSR >Mature_847_residues MQRLRRGLFLLLGVGLGILAITGLAAFYVDLAWFAELHALPVLWTRVIARWGLGLGAFLFALAVTGSNICSCWRGATLAG AWAIATGLSVFFAGSLSNHWFTLLLWLNQGPVGESDPIFNRDLGFFLFSLPFWETLQHWCFNLVLLTLIAVVLIYLVELG LSEQRLTLALSLYAQRHLLILGGSLFLIRAWGHWLERYELLYSTRGVVFGAGFADVHATLPATTLMSGVAGLTAVGFWAL ARQGIRLNLPFLKSWCPSWASSLLAPAILWGAYLGFGLLTTQLYPQLVQTFLVTPNELELERPYIEDNIRFTRAGFGLAD VEVQPFPEGGALTWEILQQNQSTLSNVRLWDADPLLATYRQLQEIRPYYQFPYVNVDRYRIGGELRQVMHAARELDFAQV PPAAQTWVNRRFFYTHGYGLTLSPVNVVTPEGLPDFFLSDIPPRVSPRYPEVASVLRVEQPALYYGELTTTDVFVGAEAR ELDYPAAERYVYSSYRGSGGVPIPHLWQRFLYAWHFGDLRILLSRELSSATRFLYRRQIRERIRRVMPFLLYDRDPYLVI QGGKLYWFFDAYTTSSRYPYSEHLPGFPFNYIRNSVKAVMDAYNGSIDWYIADPRDPLIQAYARIYPTLFKPLEAMPEPL RQHIRYPQDLFRLQAQQFATYHMTDPRLFYNREDQWQIPGQFRNRRRIPMQPQYLILTLPRDPQGVANHTPEFVLLSPYA PVNKQNMVAWIAARCDGENYGKLLVYEFSKQRLIYGPEQVEARVNQDPLISEQISLWNQHGSRVNLGTLLVIPIETSLLY VQPLYIEAEQGRLPQLTRVIAAYEDRVVMEPTLGQALEALFLPRGSR
Specific function: Unknown
COG id: COG1615
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0182 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y372_SYNJB (Q2JPC2)
Other databases:
- EMBL: CP000240 - RefSeq: YP_476631.1 - STRING: Q2JPC2 - GeneID: 3901773 - GenomeReviews: CP000240_GR - KEGG: cyb:CYB_0372 - TIGR: CYB_0372 - eggNOG: COG1615 - HOGENOM: HBG538831 - OMA: NQTDWIN - ProtClustDB: CLSK750506 - BioCyc: SSP321332:CYB_0372-MONOMER - HAMAP: MF_01600 - InterPro: IPR005372
Pfam domain/function: PF03699 UPF0182
EC number: NA
Molecular weight: Translated: 96984; Mature: 96984
Theoretical pI: Translated: 8.15; Mature: 8.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0x1157f908)-; HASH(0x1171a334)-; HASH(0x11d3a87c)-; HASH(0x11d808f0)-; HASH(0x11d85144)-; HASH(0x11b5cb84)-; HASH(0x11fe36a8)-;
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRLRRGLFLLLGVGLGILAITGLAAFYVDLAWFAELHALPVLWTRVIARWGLGLGAFLF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH ALAVTGSNICSCWRGATLAGAWAIATGLSVFFAGSLSNHWFTLLLWLNQGPVGESDPIFN HHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHEECCCCCCEEEEEEEECCCCCCCCCCCCC RDLGFFLFSLPFWETLQHWCFNLVLLTLIAVVLIYLVELGLSEQRLTLALSLYAQRHLLI CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEE LGGSLFLIRAWGHWLERYELLYSTRGVVFGAGFADVHATLPATTLMSGVAGLTAVGFWAL ECCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHH ARQGIRLNLPFLKSWCPSWASSLLAPAILWGAYLGFGLLTTQLYPQLVQTFLVTPNELEL HHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC ERPYIEDNIRFTRAGFGLADVEVQPFPEGGALTWEILQQNQSTLSNVRLWDADPLLATYR CCCCCCCCCEEEECCCCEEECEEEECCCCCCEEHHHHHCCHHHHHCEEEECCCHHHHHHH QLQEIRPYYQFPYVNVDRYRIGGELRQVMHAARELDFAQVPPAAQTWVNRRFFYTHGYGL HHHHCCCHHCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCEEEEEECCCE TLSPVNVVTPEGLPDFFLSDIPPRVSPRYPEVASVLRVEQPALYYGELTTTDVFVGAEAR EECCCEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEECCCEEEEEEECCCHH ELDYPAAERYVYSSYRGSGGVPIPHLWQRFLYAWHFGDLRILLSRELSSATRFLYRRQIR HCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHH ERIRRVMPFLLYDRDPYLVIQGGKLYWFFDAYTTSSRYPYSEHLPGFPFNYIRNSVKAVM HHHHHHHHHHEECCCCEEEEECCEEEEEEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHH DAYNGSIDWYIADPRDPLIQAYARIYPTLFKPLEAMPEPLRQHIRYPQDLFRLQAQQFAT HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHE YHMTDPRLFYNREDQWQIPGQFRNRRRIPMQPQYLILTLPRDPQGVANHTPEFVLLSPYA EECCCCEEEECCCCCEECCHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCC PVNKQNMVAWIAARCDGENYGKLLVYEFSKQRLIYGPEQVEARVNQDPLISEQISLWNQH CCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEECHHHHHHHCCCCCCHHHHHHHHHCC GSRVNLGTLLVIPIETSLLYVQPLYIEAEQGRLPQLTRVIAAYEDRVVMEPTLGQALEAL CCEEECCEEEEEEECCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCEEECCCHHHHHHHH FLPRGSR HCCCCCH >Mature Secondary Structure MQRLRRGLFLLLGVGLGILAITGLAAFYVDLAWFAELHALPVLWTRVIARWGLGLGAFLF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH ALAVTGSNICSCWRGATLAGAWAIATGLSVFFAGSLSNHWFTLLLWLNQGPVGESDPIFN HHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHEECCCCCCEEEEEEEECCCCCCCCCCCCC RDLGFFLFSLPFWETLQHWCFNLVLLTLIAVVLIYLVELGLSEQRLTLALSLYAQRHLLI CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEE LGGSLFLIRAWGHWLERYELLYSTRGVVFGAGFADVHATLPATTLMSGVAGLTAVGFWAL ECCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHH ARQGIRLNLPFLKSWCPSWASSLLAPAILWGAYLGFGLLTTQLYPQLVQTFLVTPNELEL HHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC ERPYIEDNIRFTRAGFGLADVEVQPFPEGGALTWEILQQNQSTLSNVRLWDADPLLATYR CCCCCCCCCEEEECCCCEEECEEEECCCCCCEEHHHHHCCHHHHHCEEEECCCHHHHHHH QLQEIRPYYQFPYVNVDRYRIGGELRQVMHAARELDFAQVPPAAQTWVNRRFFYTHGYGL HHHHCCCHHCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCEEEEEECCCE TLSPVNVVTPEGLPDFFLSDIPPRVSPRYPEVASVLRVEQPALYYGELTTTDVFVGAEAR EECCCEEECCCCCCHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEECCCEEEEEEECCCHH ELDYPAAERYVYSSYRGSGGVPIPHLWQRFLYAWHFGDLRILLSRELSSATRFLYRRQIR HCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHH ERIRRVMPFLLYDRDPYLVIQGGKLYWFFDAYTTSSRYPYSEHLPGFPFNYIRNSVKAVM HHHHHHHHHHEECCCCEEEEECCEEEEEEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHH DAYNGSIDWYIADPRDPLIQAYARIYPTLFKPLEAMPEPLRQHIRYPQDLFRLQAQQFAT HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHE YHMTDPRLFYNREDQWQIPGQFRNRRRIPMQPQYLILTLPRDPQGVANHTPEFVLLSPYA EECCCCEEEECCCCCEECCHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCC PVNKQNMVAWIAARCDGENYGKLLVYEFSKQRLIYGPEQVEARVNQDPLISEQISLWNQH CCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEECHHHHHHHCCCCCCHHHHHHHHHCC GSRVNLGTLLVIPIETSLLYVQPLYIEAEQGRLPQLTRVIAAYEDRVVMEPTLGQALEAL CCEEECCEEEEEEECCCEEEEEEEEEEECCCCCHHHHHHHHHHCCCEEECCCHHHHHHHH FLPRGSR HCCCCCH
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA