Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

Click here to switch to the map view.

The map label for this gene is 86607855

Identifier: 86607855

GI number: 86607855

Start: 373633

End: 374226

Strand: Direct

Name: 86607855

Synonym: CYB_0358

Alternate gene names: NA

Gene position: 373633-374226 (Clockwise)

Preceding gene: 86607853

Following gene: 86607858

Centisome position: 12.26

GC content: 61.95

Gene sequence:

>594_bases
GTGCAAGGAACCGGTTTGGCAATGGCCTGTTGGGCGACGGGCCTTCAGTTGGCAGCTTGGGGGATCCCTGGGCAATCTCC
GGATCAGGTGGCGGCCTGGGTGAGGGACAATCCTGTGCTGCGGCCCCGTCCGGGCGAAACCCTGAACATCAACCGAGTGG
AGCCGGATGGATCCCGTTTTACGTTCTTGGCCTCGGTGGCTCCGCCAGGACGGATCATCAACCCGCTGGATCGGGAGACG
ATTCGCTCGGAGCGGATGACGTTCTTTCGCCCCCAAGGACTGACAGCAGAGGATCTCTTTCGAGCCATTCGCGACGTTTA
TGGGCCGGAGATCGCCGCCGATCTGGATCAGGCGGTGGAGGTGATTCGCTACCCGTCCCCAGAAGCTCTGGCAAGCAGTC
CGGGCTATACCTTGGCCCTTGCCATCCAAGGGGTGGTGCTGCGGGGAAACCAATTTATGTACTGGCTGGAGCTGACGCAA
AACCCCGATGGCCGCGTGCAGCAGGGGCAGGTGTGGGTGTTCCAAGAGGAATGGCTTCCCAAAGTGGAGGGGGAGCTGGC
GGAGCGCTTCCCCTTGCAGGTGATGACCCGTTGA

Upstream 100 bases:

>100_bases
TGGTGTTTTTGTGTTGTTTGCCCGGAGGAATGGGAACGTGCGTTGCAATCGCTGGCCGGTCTTGGGTGTAAAGCCAACAA
GGGCTCTCTGGGGTAGTTGG

Downstream 100 bases:

>100_bases
GGGGCCCCCAATCTTTTCCCCAAGAAGAGAGGCGTTCAGGGACGGAGGAAAGCCGGCAATTCCACCCGCTCTACCTGGGG
CCGAAAGCCCAACCAAGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MQGTGLAMACWATGLQLAAWGIPGQSPDQVAAWVRDNPVLRPRPGETLNINRVEPDGSRFTFLASVAPPGRIINPLDRET
IRSERMTFFRPQGLTAEDLFRAIRDVYGPEIAADLDQAVEVIRYPSPEALASSPGYTLALAIQGVVLRGNQFMYWLELTQ
NPDGRVQQGQVWVFQEEWLPKVEGELAERFPLQVMTR

Sequences:

>Translated_197_residues
MQGTGLAMACWATGLQLAAWGIPGQSPDQVAAWVRDNPVLRPRPGETLNINRVEPDGSRFTFLASVAPPGRIINPLDRET
IRSERMTFFRPQGLTAEDLFRAIRDVYGPEIAADLDQAVEVIRYPSPEALASSPGYTLALAIQGVVLRGNQFMYWLELTQ
NPDGRVQQGQVWVFQEEWLPKVEGELAERFPLQVMTR
>Mature_197_residues
MQGTGLAMACWATGLQLAAWGIPGQSPDQVAAWVRDNPVLRPRPGETLNINRVEPDGSRFTFLASVAPPGRIINPLDRET
IRSERMTFFRPQGLTAEDLFRAIRDVYGPEIAADLDQAVEVIRYPSPEALASSPGYTLALAIQGVVLRGNQFMYWLELTQ
NPDGRVQQGQVWVFQEEWLPKVEGELAERFPLQVMTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22020; Mature: 22020

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGTGLAMACWATGLQLAAWGIPGQSPDQVAAWVRDNPVLRPRPGETLNINRVEPDGSRF
CCCCCEEHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEE
TFLASVAPPGRIINPLDRETIRSERMTFFRPQGLTAEDLFRAIRDVYGPEIAADLDQAVE
EEEEECCCCCCCCCCCCHHHHHHHCCEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
VIRYPSPEALASSPGYTLALAIQGVVLRGNQFMYWLELTQNPDGRVQQGQVWVFQEEWLP
HHCCCCCHHHHCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCEECCEEEEECCCCCC
KVEGELAERFPLQVMTR
CHHHHHHHHCCEEEECC
>Mature Secondary Structure
MQGTGLAMACWATGLQLAAWGIPGQSPDQVAAWVRDNPVLRPRPGETLNINRVEPDGSRF
CCCCCEEHHHHHCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEE
TFLASVAPPGRIINPLDRETIRSERMTFFRPQGLTAEDLFRAIRDVYGPEIAADLDQAVE
EEEEECCCCCCCCCCCCHHHHHHHCCEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
VIRYPSPEALASSPGYTLALAIQGVVLRGNQFMYWLELTQNPDGRVQQGQVWVFQEEWLP
HHCCCCCHHHHCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCEECCEEEEECCCCCC
KVEGELAERFPLQVMTR
CHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA