| Definition | Synechococcus sp. JA-2-3B'a(2-13), complete genome. |
|---|---|
| Accession | NC_007776 |
| Length | 3,046,682 |
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The map label for this gene is 86607841
Identifier: 86607841
GI number: 86607841
Start: 362824
End: 363420
Strand: Reverse
Name: 86607841
Synonym: CYB_0344
Alternate gene names: NA
Gene position: 363420-362824 (Counterclockwise)
Preceding gene: 86607842
Following gene: 86607840
Centisome position: 11.93
GC content: 56.28
Gene sequence:
>597_bases GTGGCATATTCGCGCCAATGTCTGCACCGGAAACCTCTCCACAGAAGAACTGGCGGAGCTGTTTCCATTGGTGAATCAAG CTCTAGTGGATGCCGTTTGCCGGGGAGGAAGTTAAAGGTTGCCCAGGCTGGCGGTAAGGTGAAGAAGGAGCCTCTAGGTC GCTGCTGCATGGATTTTGAGAAACTTTTGGAGGAATGGGTTGCAGCCTTTGCCCAAGTGGCCGAAGAAAGTTTGGCCTCT TTGGAGACTGCCCTGATGGAGCTGGCAGAGCACTTGGCTGTGCCTTTACAGGAAACCCTTAGGCAGTGGGAAGCCCTCTG GAATCTGGAGGAGGAAGTGGAGCTGGAGCCTGAGCCAGAACCCTTTGAGGAAACCCTCAACCCTTCTGGCGAATCTTTCA CCACCAGTCGTTTCTTCGTCAGCCCGATAGGATTTGGGGGTGTGGTTGTTTACACTTACGTGGCTTCGCCGCCAGAATAC ATCGGGGATCCCACCTGCCGCTACAATGCCCATTCTCCAGAGTTGCGCTGCGCCGTCAACCCCTGCGGCCCCTGTGAGGG CTGTCCCCACTACGAGCCTCGGAATGAGCCCCGATGA
Upstream 100 bases:
>100_bases ACCTTGGGTCGGGACGCAGCCTCCCTCGGGTACCTGTGGGCGGTTCAGGTTCTGAGGAGGGCCGGGATCCTGCTGCTCCT TCGGCGCAAATGTGGGCAGA
Downstream 100 bases:
>100_bases AGGGTGACCGCCTGATTGTTGCGCTGGATACTCCTTCTCAAGAGCAGGCTTTGGAGTGGGTGGACTCCTTGCCGCAGGTG CTGTGGTGGAAGGTGGGTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 198; Mature: 197
Protein sequence:
>198_residues MAYSRQCLHRKPLHRRTGGAVSIGESSSSGCRLPGRKLKVAQAGGKVKKEPLGRCCMDFEKLLEEWVAAFAQVAEESLAS LETALMELAEHLAVPLQETLRQWEALWNLEEEVELEPEPEPFEETLNPSGESFTTSRFFVSPIGFGGVVVYTYVASPPEY IGDPTCRYNAHSPELRCAVNPCGPCEGCPHYEPRNEPR
Sequences:
>Translated_198_residues MAYSRQCLHRKPLHRRTGGAVSIGESSSSGCRLPGRKLKVAQAGGKVKKEPLGRCCMDFEKLLEEWVAAFAQVAEESLAS LETALMELAEHLAVPLQETLRQWEALWNLEEEVELEPEPEPFEETLNPSGESFTTSRFFVSPIGFGGVVVYTYVASPPEY IGDPTCRYNAHSPELRCAVNPCGPCEGCPHYEPRNEPR >Mature_197_residues AYSRQCLHRKPLHRRTGGAVSIGESSSSGCRLPGRKLKVAQAGGKVKKEPLGRCCMDFEKLLEEWVAAFAQVAEESLASL ETALMELAEHLAVPLQETLRQWEALWNLEEEVELEPEPEPFEETLNPSGESFTTSRFFVSPIGFGGVVVYTYVASPPEYI GDPTCRYNAHSPELRCAVNPCGPCEGCPHYEPRNEPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21996; Mature: 21865
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 4.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYSRQCLHRKPLHRRTGGAVSIGESSSSGCRLPGRKLKVAQAGGKVKKEPLGRCCMDFE CCCCHHHHHHCCCHHHCCCEEEECCCCCCCCCCCCCEEEHHHCCCCCCHHHHHHHHHHHH KLLEEWVAAFAQVAEESLASLETALMELAEHLAVPLQETLRQWEALWNLEEEVELEPEPE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCCCCC PFEETLNPSGESFTTSRFFVSPIGFGGVVVYTYVASPPEYIGDPTCRYNAHSPELRCAVN HHHHHCCCCCCCEECCCEEECCCCCCCEEEEEEECCCHHHHCCCCEEECCCCCCEEEECC PCGPCEGCPHYEPRNEPR CCCCCCCCCCCCCCCCCC >Mature Secondary Structure AYSRQCLHRKPLHRRTGGAVSIGESSSSGCRLPGRKLKVAQAGGKVKKEPLGRCCMDFE CCCHHHHHHCCCHHHCCCEEEECCCCCCCCCCCCCEEEHHHCCCCCCHHHHHHHHHHHH KLLEEWVAAFAQVAEESLASLETALMELAEHLAVPLQETLRQWEALWNLEEEVELEPEPE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCCCCCCC PFEETLNPSGESFTTSRFFVSPIGFGGVVVYTYVASPPEYIGDPTCRYNAHSPELRCAVN HHHHHCCCCCCCEECCCEEECCCCCCCEEEEEEECCCHHHHCCCCEEECCCCCCEEEECC PCGPCEGCPHYEPRNEPR CCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA