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The map label for this gene is nodB [H]

Identifier: 86607825

GI number: 86607825

Start: 342764

End: 343864

Strand: Direct

Name: nodB [H]

Synonym: CYB_0326

Alternate gene names: 86607825

Gene position: 342764-343864 (Clockwise)

Preceding gene: 86607824

Following gene: 86607826

Centisome position: 11.25

GC content: 54.22

Gene sequence:

>1101_bases
ATGCACTCTCTGAAAGCGTTGAAAGCGTTGATATTTTGCCTAGCCTTCCTACTGGTTGGACTGATCTACTACTGCACGGT
AGAGGCCCAGCCTCTTTTTGAGCTGAACCTGACGGCCACCTCGGAATACAACCTCATTCTCCCCATCGAAAGCATTCGGG
TGGTGCGCGGCGCCAATCCCCAAGATTTGCTCATTTATCTATCAGCTCCTTCTGCAGCCTGGATCCATCAAGAAGAGGTG
AACGGGCACTATTTGATTGACATCCCCTACGGAGTCATTACCCGTACAACAACCGTCGAGATTGCCTCGGATCTGCCCTA
TCGACTGAGCTGGGGCAACCAAAATGAGCAGACGGGGCGACTGTTGATTACCCCTGCTCCCCCTCGTGTGGAGGTGTTTC
TGCAGCATAGCTGGATCCCGGATCCCGACTTTCTCGATCCGGCAGAAAATACTCAACCTTTGCAACTGCCCTTGGAAGAA
ATGCTGGGGCCTTTACTGGAGGTGCCGCCTCGTTCTGCCTTTCTGACCATTGACGATGGCCCCTGGCCTCAGTCTACCCC
CCGACTTTTACAGGTTTTGGATGATCTTCAGATCCCGGCCACTTTCTTTGTTATCGGCACCCACGTTTCCCGATTTCCTG
AATTGGCTCAATTGATCCAGGCCCATCACCACACCATAGCCAATCACACTTTTACCCACGATTATCAACGTCTCTACGGA
AGCAACGAGCTGTTTTATGCTGAGGTGGATCAGACAACCCAACTGCTCAAAACGCTGAACTTGGATCCCCAACTGGTTGT
TCGCCCACCGGGAGGTTTTCGCCTAGATTCTGCTTTGCGTCGCTCTCTGGAGCAGGCAGGATATCGAGTTCTTTACTGGA
ACATGAGCCCGGAAGATGCTTACGCGGGCCAAAGCGCAGCCCAACTTTTGGAGCGTGTTCGAGCTCAGTTGCCGGCGATC
CAGGCTTCCGATCAGCCCCTGGTTTTGCTGCTCCACGATCGCTGGCCCCACACTGCAGAGGCCCTGCCGGATATCGTCGC
CGCCATTGAAGGGGCGGGCTATCGCTTTTTGCCTTGGCCGGCCTTCAGGGATCCCGTTTGA

Upstream 100 bases:

>100_bases
CCAGAAGCCCAGCAGGGCCTTCCGGTTAAATTGATGGGCTCTATCGAGCTCAGGTAGCTTCTGTCCTATAAAATTGGTTG
CGAAGGCTTAAGCCATTCCT

Downstream 100 bases:

>100_bases
AGGGCTGGCAACAGGTTTTCTGGCTTGAGGACTCCGACCCGCCTTTGCCGGCTGGGGATGTTCAAAGAAGGGCTGCATCT
CGCTCAGCTCAGCAGCGTTG

Product: polysaccharide deacetylase family protein

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MHSLKALKALIFCLAFLLVGLIYYCTVEAQPLFELNLTATSEYNLILPIESIRVVRGANPQDLLIYLSAPSAAWIHQEEV
NGHYLIDIPYGVITRTTTVEIASDLPYRLSWGNQNEQTGRLLITPAPPRVEVFLQHSWIPDPDFLDPAENTQPLQLPLEE
MLGPLLEVPPRSAFLTIDDGPWPQSTPRLLQVLDDLQIPATFFVIGTHVSRFPELAQLIQAHHHTIANHTFTHDYQRLYG
SNELFYAEVDQTTQLLKTLNLDPQLVVRPPGGFRLDSALRRSLEQAGYRVLYWNMSPEDAYAGQSAAQLLERVRAQLPAI
QASDQPLVLLLHDRWPHTAEALPDIVAAIEGAGYRFLPWPAFRDPV

Sequences:

>Translated_366_residues
MHSLKALKALIFCLAFLLVGLIYYCTVEAQPLFELNLTATSEYNLILPIESIRVVRGANPQDLLIYLSAPSAAWIHQEEV
NGHYLIDIPYGVITRTTTVEIASDLPYRLSWGNQNEQTGRLLITPAPPRVEVFLQHSWIPDPDFLDPAENTQPLQLPLEE
MLGPLLEVPPRSAFLTIDDGPWPQSTPRLLQVLDDLQIPATFFVIGTHVSRFPELAQLIQAHHHTIANHTFTHDYQRLYG
SNELFYAEVDQTTQLLKTLNLDPQLVVRPPGGFRLDSALRRSLEQAGYRVLYWNMSPEDAYAGQSAAQLLERVRAQLPAI
QASDQPLVLLLHDRWPHTAEALPDIVAAIEGAGYRFLPWPAFRDPV
>Mature_366_residues
MHSLKALKALIFCLAFLLVGLIYYCTVEAQPLFELNLTATSEYNLILPIESIRVVRGANPQDLLIYLSAPSAAWIHQEEV
NGHYLIDIPYGVITRTTTVEIASDLPYRLSWGNQNEQTGRLLITPAPPRVEVFLQHSWIPDPDFLDPAENTQPLQLPLEE
MLGPLLEVPPRSAFLTIDDGPWPQSTPRLLQVLDDLQIPATFFVIGTHVSRFPELAQLIQAHHHTIANHTFTHDYQRLYG
SNELFYAEVDQTTQLLKTLNLDPQLVVRPPGGFRLDSALRRSLEQAGYRVLYWNMSPEDAYAGQSAAQLLERVRAQLPAI
QASDQPLVLLLHDRWPHTAEALPDIVAAIEGAGYRFLPWPAFRDPV

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 41270; Mature: 41270

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSLKALKALIFCLAFLLVGLIYYCTVEAQPLFELNLTATSEYNLILPIESIRVVRGANP
CCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEECCCCEEEEEHHHHHEECCCCC
QDLLIYLSAPSAAWIHQEEVNGHYLIDIPYGVITRTTTVEIASDLPYRLSWGNQNEQTGR
CEEEEEEECCCCEEEEHCCCCCEEEEEECCCCEEEEEEEEECCCCCEEEECCCCCCCCCE
LLITPAPPRVEVFLQHSWIPDPDFLDPAENTQPLQLPLEEMLGPLLEVPPRSAFLTIDDG
EEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCC
PWPQSTPRLLQVLDDLQIPATFFVIGTHVSRFPELAQLIQAHHHTIANHTFTHDYQRLYG
CCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
SNELFYAEVDQTTQLLKTLNLDPQLVVRPPGGFRLDSALRRSLEQAGYRVLYWNMSPEDA
CCCEEEEEHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCHH
YAGQSAAQLLERVRAQLPAIQASDQPLVLLLHDRWPHTAEALPDIVAAIEGAGYRFLPWP
HCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC
AFRDPV
CCCCCC
>Mature Secondary Structure
MHSLKALKALIFCLAFLLVGLIYYCTVEAQPLFELNLTATSEYNLILPIESIRVVRGANP
CCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEECCCCEEEEEHHHHHEECCCCC
QDLLIYLSAPSAAWIHQEEVNGHYLIDIPYGVITRTTTVEIASDLPYRLSWGNQNEQTGR
CEEEEEEECCCCEEEEHCCCCCEEEEEECCCCEEEEEEEEECCCCCEEEECCCCCCCCCE
LLITPAPPRVEVFLQHSWIPDPDFLDPAENTQPLQLPLEEMLGPLLEVPPRSAFLTIDDG
EEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCC
PWPQSTPRLLQVLDDLQIPATFFVIGTHVSRFPELAQLIQAHHHTIANHTFTHDYQRLYG
CCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
SNELFYAEVDQTTQLLKTLNLDPQLVVRPPGGFRLDSALRRSLEQAGYRVLYWNMSPEDA
CCCEEEEEHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCHH
YAGQSAAQLLERVRAQLPAIQASDQPLVLLLHDRWPHTAEALPDIVAAIEGAGYRFLPWP
HCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCC
AFRDPV
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]