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The map label for this gene is rimM

Identifier: 86607822

GI number: 86607822

Start: 339946

End: 340485

Strand: Reverse

Name: rimM

Synonym: CYB_0323

Alternate gene names: 86607822

Gene position: 340485-339946 (Counterclockwise)

Preceding gene: 86607823

Following gene: 86607821

Centisome position: 11.18

GC content: 62.22

Gene sequence:

>540_bases
ATGATGGCCCGGGATCCCGATTGGCTGCTGGTGGGACAGGTGGTGGCGGCCCACGGCTTGCGGGGCTGGCTGCGGGTTAG
GTGCTGGTCGGATTTTCCAGAGCGCTTCACAGAGCCTGGACCACGCTGGTTGCAGCGGGATACGGATCCCGAGCCCCTGC
TGCACCCCTTGATCGAGGGGCAGTTTTTCCCGGCTAAGGGTCTTTATTTGGTGCGACTGGAAGGGATCCCCAATCGAACG
GTGGCTGAGACCTGGGTGGGGGCTAGGCTGCTGGTACCGGCTTCCCACCGCTTGCCCTTGCAGCCGGAAGAGTACCACTA
CCGCGATCTCATCGGCTTGGCCGTCTATCACCAAGGGGAGCTGCTGGGACAGGTTTCGGGGATTTTGGCAGCCGGCCAGG
ATGTGCTGGAGATAACGACCTCTGACCATCGGCAGGTGTTGATACCCTTTGTGAAAGCCCTGGTGCCTGTCGTGGACTTG
GAAAAAGGCGCGCTTCACGTGCAGCCGCCGCCGGGGCTGGTGGAGAGCTTTCTGGGTTAG

Upstream 100 bases:

>100_bases
TGGGGAAGGATCTCGCGCGGCGGCCTCTCAGAAGCTGCGTACCCCGGCTTCTTTCCCAACCGAAGTGGACTTTCCGCGGC
TCGACTGAGTTTGACCGACC

Downstream 100 bases:

>100_bases
AGTTCGGCAAGACGGCCTGACTTCCGTACCTGCATCCCATCCTGAACTTGGCCCTCAGAAGCGTCTGTGTGGCCGTTCTA
GCCTTTTGTGCTATCATGGG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MMARDPDWLLVGQVVAAHGLRGWLRVRCWSDFPERFTEPGPRWLQRDTDPEPLLHPLIEGQFFPAKGLYLVRLEGIPNRT
VAETWVGARLLVPASHRLPLQPEEYHYRDLIGLAVYHQGELLGQVSGILAAGQDVLEITTSDHRQVLIPFVKALVPVVDL
EKGALHVQPPPGLVESFLG

Sequences:

>Translated_179_residues
MMARDPDWLLVGQVVAAHGLRGWLRVRCWSDFPERFTEPGPRWLQRDTDPEPLLHPLIEGQFFPAKGLYLVRLEGIPNRT
VAETWVGARLLVPASHRLPLQPEEYHYRDLIGLAVYHQGELLGQVSGILAAGQDVLEITTSDHRQVLIPFVKALVPVVDL
EKGALHVQPPPGLVESFLG
>Mature_179_residues
MMARDPDWLLVGQVVAAHGLRGWLRVRCWSDFPERFTEPGPRWLQRDTDPEPLLHPLIEGQFFPAKGLYLVRLEGIPNRT
VAETWVGARLLVPASHRLPLQPEEYHYRDLIGLAVYHQGELLGQVSGILAAGQDVLEITTSDHRQVLIPFVKALVPVVDL
EKGALHVQPPPGLVESFLG

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_SYNJB (Q2JPG6)

Other databases:

- EMBL:   CP000240
- RefSeq:   YP_476584.1
- ProteinModelPortal:   Q2JPG6
- SMR:   Q2JPG6
- STRING:   Q2JPG6
- GeneID:   3901955
- GenomeReviews:   CP000240_GR
- KEGG:   cyb:CYB_0323
- TIGR:   CYB_0323
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- ProtClustDB:   PRK00122
- BioCyc:   SSP321332:CYB_0323-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20055; Mature: 20055

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMARDPDWLLVGQVVAAHGLRGWLRVRCWSDFPERFTEPGPRWLQRDTDPEPLLHPLIEG
CCCCCCCEEHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCHHHCCCCCCCHHHHHHHCC
QFFPAKGLYLVRLEGIPNRTVAETWVGARLLVPASHRLPLQPEEYHYRDLIGLAVYHQGE
CCCCCCCEEEEEECCCCCCHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCH
LLGQVSGILAAGQDVLEITTSDHRQVLIPFVKALVPVVDLEKGALHVQPPPGLVESFLG
HHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCC
>Mature Secondary Structure
MMARDPDWLLVGQVVAAHGLRGWLRVRCWSDFPERFTEPGPRWLQRDTDPEPLLHPLIEG
CCCCCCCEEHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCHHHCCCCCCCHHHHHHHCC
QFFPAKGLYLVRLEGIPNRTVAETWVGARLLVPASHRLPLQPEEYHYRDLIGLAVYHQGE
CCCCCCCEEEEEECCCCCCHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCH
LLGQVSGILAAGQDVLEITTSDHRQVLIPFVKALVPVVDLEKGALHVQPPPGLVESFLG
HHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA