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The map label for this gene is rbpA [H]

Identifier: 86607801

GI number: 86607801

Start: 316540

End: 316863

Strand: Direct

Name: rbpA [H]

Synonym: CYB_0302

Alternate gene names: 86607801

Gene position: 316540-316863 (Clockwise)

Preceding gene: 86607800

Following gene: 86607815

Centisome position: 10.39

GC content: 56.79

Gene sequence:

>324_bases
ATGTCGATTTATGTTGGCAACCTTTCCTTTAAGGTGACAGAAGCGGATTTGACCGCTGTTTTTGCTGAGTACGGTTCTGT
CAAGCGGGTGCAAATCCCCACTGACCGCGAGACAGGCCGCATTCGGGGCTTCGGGTTTGTGGAAATGAGCTCTGAAGCAG
AGGAGCAAGCTGCCATTGCTGCGCTGGATGGGGCGGAATGGATGGGGCGCGACCTCAAGGTGAACAAAGCTCGTCCCCGG
GAAGAACGCCCCACCTCAGGTTTCCGCTCTGGTAACGCGAACAGTGGCGGCGAGCGGCGGCGGAGTTTTCAATCTCGCTA
TTGA

Upstream 100 bases:

>100_bases
TGCTCGTTTCTTCTGGTCTTGACGGATTTTCACGTTTTGTATTGGCAGACGGCTCTCCGAACATCTCACCCTTTGTTACT
CTCTCTTTCGGAGATCGTCT

Downstream 100 bases:

>100_bases
AACGCCTGCTGAGGCTTCCCGGTGCTGGGCAAGGGATTCTCAGTTGAGCTTGTTTTGAAGCGCAGCACCAGGATCCAGCT
GTTTCTCTAGCCTGCTTCCA

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MSIYVGNLSFKVTEADLTAVFAEYGSVKRVQIPTDRETGRIRGFGFVEMSSEAEEQAAIAALDGAEWMGRDLKVNKARPR
EERPTSGFRSGNANSGGERRRSFQSRY

Sequences:

>Translated_107_residues
MSIYVGNLSFKVTEADLTAVFAEYGSVKRVQIPTDRETGRIRGFGFVEMSSEAEEQAAIAALDGAEWMGRDLKVNKARPR
EERPTSGFRSGNANSGGERRRSFQSRY
>Mature_106_residues
SIYVGNLSFKVTEADLTAVFAEYGSVKRVQIPTDRETGRIRGFGFVEMSSEAEEQAAIAALDGAEWMGRDLKVNKARPRE
ERPTSGFRSGNANSGGERRRSFQSRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4502847, Length=91, Percent_Identity=37.3626373626374, Blast_Score=70, Evalue=5e-13,
Organism=Homo sapiens, GI4757926, Length=82, Percent_Identity=36.5853658536585, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI35493811, Length=82, Percent_Identity=36.5853658536585, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=39.4736842105263, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI15055543, Length=78, Percent_Identity=41.025641025641, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=48.75, Blast_Score=79, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=46.7532467532467, Blast_Score=76, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=49.3506493506493, Blast_Score=75, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17539498, Length=89, Percent_Identity=38.2022471910112, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=38.1578947368421, Blast_Score=65, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6319689, Length=80, Percent_Identity=43.75, Blast_Score=61, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=39.7435897435897, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19920866, Length=97, Percent_Identity=31.9587628865979, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582412, Length=97, Percent_Identity=31.9587628865979, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582417, Length=97, Percent_Identity=31.9587628865979, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45550943, Length=97, Percent_Identity=31.9587628865979, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582419, Length=97, Percent_Identity=31.9587628865979, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582423, Length=97, Percent_Identity=31.9587628865979, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582421, Length=97, Percent_Identity=31.9587628865979, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 11911; Mature: 11780

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYVGNLSFKVTEADLTAVFAEYGSVKRVQIPTDRETGRIRGFGFVEMSSEAEEQAAIA
CEEEECCEEEEEEHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEECCCCCHHHEEE
ALDGAEWMGRDLKVNKARPREERPTSGFRSGNANSGGERRRSFQSRY
EECCHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
SIYVGNLSFKVTEADLTAVFAEYGSVKRVQIPTDRETGRIRGFGFVEMSSEAEEQAAIA
EEEECCEEEEEEHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEECCCCCHHHEEE
ALDGAEWMGRDLKVNKARPREERPTSGFRSGNANSGGERRRSFQSRY
EECCHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704138; 8590279; 8905231 [H]