Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86607751

Identifier: 86607751

GI number: 86607751

Start: 267544

End: 268326

Strand: Direct

Name: 86607751

Synonym: CYB_0252

Alternate gene names: NA

Gene position: 267544-268326 (Clockwise)

Preceding gene: 86607750

Following gene: 86607753

Centisome position: 8.78

GC content: 62.2

Gene sequence:

>783_bases
ATGCCTTTTATTAGCCTGTTGACGGATTTTGGCCTGCAGGATCCCTATGTGGGCATTATGAAAGGGGTGATTCATACCCT
TTCCCCACAGGCTCAACTCATCGACCTCAGCCATGGGATCCCGCCTCAGGATGTGGCGGCGGCTCGCTTTGCCCTGATGA
CGGCCTACCCCTATCTGCCGTCGGGCACCATTCACCTGGCCGTTGTGGATCCAGGGGTGGGGAGTAGCCGCCGGGCGGTA
GCCATCCAAACCGAGACGGGCTTTTTGGTTGGCCCTGACAATGGCCTGTTCAGCGGCGTTTTGGCCCAAACTCCGGCGCT
GGCTGCTGTGGAACTCAACCGGCCCCGCTATTGGCGCACCCCCTCTCCCAGCCGCACCTTTCATGGGCGGGATATTTTTG
CCCCGGTTGCCGCTCATCTGGCCAACGGGATCCCTTTGGCGGAGCTGGGGGATCCCCTAGACGTAGCAGAACTAACCCGC
TGGGAGTGGCCGCCACCCCAGATGGAGACCAACGGCTGTCGCGGCCTGGTCCAGGCCATCGACCACTTCGGCAACGGCAT
CACCAACCTGCCCGGACATTGGGTGGAAGGTCGAAGCTGGAGCGCCTGGATCAAAGGGATCCCCGTCCGCTCCGTGGCCA
CCTTTGCTGAGGGAGAAGTTGGGGAAGTGCTGGCCCTGGTGGGCAGCTCCGGCTGGGTGGAGATCGTGCAAAACCGAGGC
AATGCCAGCCGTGCCTTGGGTTTCAAAGTGGGAGATGAGGTGCGCGTGCAGTGGAGCGGCTAG

Upstream 100 bases:

>100_bases
AGCGCCCGCAACCTGCTCTTGCTGCCCGCTAGCCACCCCATCCATAAGCGCTGTTATCTTTTGGGATCCTTAAACTGGGA
TCCTCAAGCCTCAAAAGGGT

Downstream 100 bases:

>100_bases
ATCCCCTCGCCTGAAAAGAGAGGGAGAGACTGGGGATCCTAGGCAGGTTGGCTTTCCACCGTCACGGCTTCCGTCGGAGT
AGTGGGGTTTGAGGCGCCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MPFISLLTDFGLQDPYVGIMKGVIHTLSPQAQLIDLSHGIPPQDVAAARFALMTAYPYLPSGTIHLAVVDPGVGSSRRAV
AIQTETGFLVGPDNGLFSGVLAQTPALAAVELNRPRYWRTPSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELTR
WEWPPPQMETNGCRGLVQAIDHFGNGITNLPGHWVEGRSWSAWIKGIPVRSVATFAEGEVGEVLALVGSSGWVEIVQNRG
NASRALGFKVGDEVRVQWSG

Sequences:

>Translated_260_residues
MPFISLLTDFGLQDPYVGIMKGVIHTLSPQAQLIDLSHGIPPQDVAAARFALMTAYPYLPSGTIHLAVVDPGVGSSRRAV
AIQTETGFLVGPDNGLFSGVLAQTPALAAVELNRPRYWRTPSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELTR
WEWPPPQMETNGCRGLVQAIDHFGNGITNLPGHWVEGRSWSAWIKGIPVRSVATFAEGEVGEVLALVGSSGWVEIVQNRG
NASRALGFKVGDEVRVQWSG
>Mature_259_residues
PFISLLTDFGLQDPYVGIMKGVIHTLSPQAQLIDLSHGIPPQDVAAARFALMTAYPYLPSGTIHLAVVDPGVGSSRRAVA
IQTETGFLVGPDNGLFSGVLAQTPALAAVELNRPRYWRTPSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELTRW
EWPPPQMETNGCRGLVQAIDHFGNGITNLPGHWVEGRSWSAWIKGIPVRSVATFAEGEVGEVLALVGSSGWVEIVQNRGN
ASRALGFKVGDEVRVQWSG

Specific function: Unknown

COG id: COG1912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002747
- InterPro:   IPR023227
- InterPro:   IPR023228 [H]

Pfam domain/function: PF01887 DUF62 [H]

EC number: NA

Molecular weight: Translated: 27886; Mature: 27755

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFISLLTDFGLQDPYVGIMKGVIHTLSPQAQLIDLSHGIPPQDVAAARFALMTAYPYLP
CCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
SGTIHLAVVDPGVGSSRRAVAIQTETGFLVGPDNGLFSGVLAQTPALAAVELNRPRYWRT
CCEEEEEEECCCCCCCCEEEEEEECCCEEECCCCCHHHHHHHCCCCEEEEECCCCCEECC
PSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELTRWEWPPPQMETNGCRGLVQAI
CCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHH
DHFGNGITNLPGHWVEGRSWSAWIKGIPVRSVATFAEGEVGEVLALVGSSGWVEIVQNRG
HHHCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCEEHHHCCC
NASRALGFKVGDEVRVQWSG
CCCCEEEEECCCEEEEEECC
>Mature Secondary Structure 
PFISLLTDFGLQDPYVGIMKGVIHTLSPQAQLIDLSHGIPPQDVAAARFALMTAYPYLP
CHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
SGTIHLAVVDPGVGSSRRAVAIQTETGFLVGPDNGLFSGVLAQTPALAAVELNRPRYWRT
CCEEEEEEECCCCCCCCEEEEEEECCCEEECCCCCHHHHHHHCCCCEEEEECCCCCEECC
PSPSRTFHGRDIFAPVAAHLANGIPLAELGDPLDVAELTRWEWPPPQMETNGCRGLVQAI
CCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHH
DHFGNGITNLPGHWVEGRSWSAWIKGIPVRSVATFAEGEVGEVLALVGSSGWVEIVQNRG
HHHCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCEEHHHCCC
NASRALGFKVGDEVRVQWSG
CCCCEEEEECCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]