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The map label for this gene is nodB [H]

Identifier: 86607629

GI number: 86607629

Start: 140385

End: 141068

Strand: Direct

Name: nodB [H]

Synonym: CYB_0127

Alternate gene names: 86607629

Gene position: 140385-141068 (Clockwise)

Preceding gene: 86607626

Following gene: 86607630

Centisome position: 4.61

GC content: 60.38

Gene sequence:

>684_bases
ATGCTCTTCTCTTCTCGGCAAATCCTGCCCCCATCTCTCTACCCACCCCTGCATTGGGGCCTCAAGACCCTCTTTCCCGA
CGGCCTGTGGGAGTTGCCGGCAGATCCCCATACCCAGCGGGTGGCTCTGACCTTTGACGATGGCCCTCACCCTGAGTACA
CCCCTGCTTTGTTGCAGGTTTTGATGGATTTTCAGGTGCCGGCCACGTTTTTTGTGTTGGGAGAACGGGTGCAGCGCTGG
CCCCACCTGGCCCGTCAGATCCGCCAACAAGGCCACCGCATTGGCCTTCACGGCTGGCAGCATCGCCCTTTTACCGAGCT
TGCCCCTGGAGAGCTTTATCAGAGCCTGAAGCGCAGCCAAGCTGCCCTGGTGGCTGCCTGTGGCGGGATCCCTGACGATT
ATCGGGCTGTGCGCCCGCCCAATGGCTTGTTTTGGCCGCAGACGCTTGCGGATTTGCGCCGTTGGGGCTTTTGTCCGGTG
ATGTGGAGCGTGGTGCCTGAGGATTGGCTGATCCCACCGGTATCGGTGGTAGTGGAGCGGGTGCTGGCCCAGGTGCGGCC
TGGCTCCTTAATCGTGCTGCACGATGGGGTACAAGGAGGAGCCCAAGTGGTTGAGGTAACGCGGCAGTTGATCCCAACTT
TGAAGAAGCGGGGATTTGAATTTGTCCACTTGCCGGATCCCTGA

Upstream 100 bases:

>100_bases
TTTTCAATTGGTTGGCTCAATCGGCAATACCTAAATTTGTTACCCAGTTGATCACCCAAAGCATTGCCCTCTGGTTCTGG
ACAAAATACAGCCCACCACA

Downstream 100 bases:

>100_bases
GATCTTTCCAGTCAGGGAGAAAGTTAAATACAGTAGAGGCACGCACAAGCAGGAGGGTCAGGCCATGGGCGCACGCAAGA
TTATCTACGGCATTTTTGGG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MLFSSRQILPPSLYPPLHWGLKTLFPDGLWELPADPHTQRVALTFDDGPHPEYTPALLQVLMDFQVPATFFVLGERVQRW
PHLARQIRQQGHRIGLHGWQHRPFTELAPGELYQSLKRSQAALVAACGGIPDDYRAVRPPNGLFWPQTLADLRRWGFCPV
MWSVVPEDWLIPPVSVVVERVLAQVRPGSLIVLHDGVQGGAQVVEVTRQLIPTLKKRGFEFVHLPDP

Sequences:

>Translated_227_residues
MLFSSRQILPPSLYPPLHWGLKTLFPDGLWELPADPHTQRVALTFDDGPHPEYTPALLQVLMDFQVPATFFVLGERVQRW
PHLARQIRQQGHRIGLHGWQHRPFTELAPGELYQSLKRSQAALVAACGGIPDDYRAVRPPNGLFWPQTLADLRRWGFCPV
MWSVVPEDWLIPPVSVVVERVLAQVRPGSLIVLHDGVQGGAQVVEVTRQLIPTLKKRGFEFVHLPDP
>Mature_227_residues
MLFSSRQILPPSLYPPLHWGLKTLFPDGLWELPADPHTQRVALTFDDGPHPEYTPALLQVLMDFQVPATFFVLGERVQRW
PHLARQIRQQGHRIGLHGWQHRPFTELAPGELYQSLKRSQAALVAACGGIPDDYRAVRPPNGLFWPQTLADLRRWGFCPV
MWSVVPEDWLIPPVSVVVERVLAQVRPGSLIVLHDGVQGGAQVVEVTRQLIPTLKKRGFEFVHLPDP

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=179, Percent_Identity=30.7262569832402, Blast_Score=72, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 25725; Mature: 25725

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFSSRQILPPSLYPPLHWGLKTLFPDGLWELPADPHTQRVALTFDDGPHPEYTPALLQV
CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHH
LMDFQVPATFFVLGERVQRWPHLARQIRQQGHRIGLHGWQHRPFTELAPGELYQSLKRSQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHH
AALVAACGGIPDDYRAVRPPNGLFWPQTLADLRRWGFCPVMWSVVPEDWLIPPVSVVVER
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHH
VLAQVRPGSLIVLHDGVQGGAQVVEVTRQLIPTLKKRGFEFVHLPDP
HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCC
>Mature Secondary Structure
MLFSSRQILPPSLYPPLHWGLKTLFPDGLWELPADPHTQRVALTFDDGPHPEYTPALLQV
CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHH
LMDFQVPATFFVLGERVQRWPHLARQIRQQGHRIGLHGWQHRPFTELAPGELYQSLKRSQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHH
AALVAACGGIPDDYRAVRPPNGLFWPQTLADLRRWGFCPVMWSVVPEDWLIPPVSVVVER
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHH
VLAQVRPGSLIVLHDGVQGGAQVVEVTRQLIPTLKKRGFEFVHLPDP
HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3960737 [H]