Definition Synechococcus sp. JA-2-3B'a(2-13), complete genome.
Accession NC_007776
Length 3,046,682

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The map label for this gene is 86607518

Identifier: 86607518

GI number: 86607518

Start: 18219

End: 19631

Strand: Direct

Name: 86607518

Synonym: CYB_0016

Alternate gene names: NA

Gene position: 18219-19631 (Clockwise)

Preceding gene: 86607515

Following gene: 86607525

Centisome position: 0.6

GC content: 55.98

Gene sequence:

>1413_bases
GTGTGGATTTGCCCAGATTTAAGGTGTGTGAGGAAGTGCCATATGAACTTCAAAGGTCGCTCGTTGGCGGTTTTGTGTGG
AGTCTTGCTGCTAGGCGGCTGCGGAGAAGTTAATGAGTCTCCGACCTTGCCTGGGCCCGTCCAGGTGGATCCGGCTGCCT
TTGTCTCGGCCCAAGAGTATCGCTTTACCCCCGGCTCGGTGCTGGAGACCACCAGCCTGCGGCTGGACTATGTCAATCCG
AGGTTTGACAACGGGATCCCTGTGCGCACCAACCCCCTCCAAGGCAGCGGTGAAGCTCGCATCGCCAATGTTGAAGCCCG
CATCTTGCCTGTGAACGAGATCCCAGCCACTGAGCTGACGATTGACTCAACTCTTCGCTCCAGCACCCTGGCCATCCAAA
TTGGGCGAACCACACCGCTGGTGAATATCACTGCCTTTGGACCCAACGACGGCAGGCTATCTACGCAATTCAATATCGCC
GGGCTGGTTGCAATTTCGACCCTCCCCAACGACCAGCGCATTCGGGTGAACACCACCTTCAGGGCTATCCGAGATGACCG
CACTGTTTTAACGCTCACCGTGCGCCGCATTTTGGTGAGTAGAAATGGTAATCAAGTCGTCCTGGAGGGAGATTCTTCCC
TGATTGTCCCCACTGTGGGTGTATTGTTTGAAAACGGTGGCCCTGGCCCCGGTGGTGAGATTTTGGCGCCTGGCTCCTTT
GTCAACCCTCCTCCACCCCAAGGTCCTGTAGTCGCTATTCTCCAAACAGGCAGTTTCTCCGCGAGCTTTGTGGTGCGGCA
GCGGGGGGTTGCGGGCGATGGCACTCCTGAGGATGCCTTGGCTCTCTTTGCCCGCCTGAACTTCCGGCCCAACCAGGCGG
AGATTGTCTATCGCCCTGCCCAGGTGGGTACGCAGTCGGTACTGTTCGCTCCGGATCCGACTCGACCGAACATCTTGCCC
AATCAGTTGGTTCGCATCCGCCGCCTGTTGAACGGTCGTGTTCAAGCGGAGTTTGATCCGGCCAACGTCAGCACAGTCCT
CAACTTTGTGCAGGTCAGCCCGCCGCCAAATGCTCCTACAGCCTTTGATTACTTTTTCTCATTACGAACTGAAAGGGAAG
AAGGCGGGGGTACTCCAGTTGTTTTGCAGGGCATCGTGCCTGCAACGGGGGATTTCCTCTTCCGCACCTTGGCCGGAGCA
CAGTTATCAGGGCCGTTTAACCGGCTTGATATTGGTGGGGGAACACAAAGAGGAAATCTGAACCTTGTCTTCGATTCAAC
GACCTCTGCTGAGCGCATTTCCGGCCAGTGGTTTTTGGAACAGCAATTCCCTACTAACACTCTTACTCCAGACCCAACTG
GAACTATCTTAATCATCCGTGGGTTCTTTGAGGGAACTGAGGTACGCCTGTAG

Upstream 100 bases:

>100_bases
GGAAATGGCCCATCCCCTAGATATGGGGTATCATAGCCTCGAGCAGGGGCGGCCAGCTTACCTGTAGCGTTAGGGGTTGG
GTGCCTTCTCCCCATTTTGT

Downstream 100 bases:

>100_bases
CCCAGGCAAACCGTCTGATCCCAGAGCAGGGATCCGCTCTGGCTTGGCCTTTTCGTCGGTCAGAGCTTGGGTAGATCGCT
GAGCACCACCTGTGCGCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MWICPDLRCVRKCHMNFKGRSLAVLCGVLLLGGCGEVNESPTLPGPVQVDPAAFVSAQEYRFTPGSVLETTSLRLDYVNP
RFDNGIPVRTNPLQGSGEARIANVEARILPVNEIPATELTIDSTLRSSTLAIQIGRTTPLVNITAFGPNDGRLSTQFNIA
GLVAISTLPNDQRIRVNTTFRAIRDDRTVLTLTVRRILVSRNGNQVVLEGDSSLIVPTVGVLFENGGPGPGGEILAPGSF
VNPPPPQGPVVAILQTGSFSASFVVRQRGVAGDGTPEDALALFARLNFRPNQAEIVYRPAQVGTQSVLFAPDPTRPNILP
NQLVRIRRLLNGRVQAEFDPANVSTVLNFVQVSPPPNAPTAFDYFFSLRTEREEGGGTPVVLQGIVPATGDFLFRTLAGA
QLSGPFNRLDIGGGTQRGNLNLVFDSTTSAERISGQWFLEQQFPTNTLTPDPTGTILIIRGFFEGTEVRL

Sequences:

>Translated_470_residues
MWICPDLRCVRKCHMNFKGRSLAVLCGVLLLGGCGEVNESPTLPGPVQVDPAAFVSAQEYRFTPGSVLETTSLRLDYVNP
RFDNGIPVRTNPLQGSGEARIANVEARILPVNEIPATELTIDSTLRSSTLAIQIGRTTPLVNITAFGPNDGRLSTQFNIA
GLVAISTLPNDQRIRVNTTFRAIRDDRTVLTLTVRRILVSRNGNQVVLEGDSSLIVPTVGVLFENGGPGPGGEILAPGSF
VNPPPPQGPVVAILQTGSFSASFVVRQRGVAGDGTPEDALALFARLNFRPNQAEIVYRPAQVGTQSVLFAPDPTRPNILP
NQLVRIRRLLNGRVQAEFDPANVSTVLNFVQVSPPPNAPTAFDYFFSLRTEREEGGGTPVVLQGIVPATGDFLFRTLAGA
QLSGPFNRLDIGGGTQRGNLNLVFDSTTSAERISGQWFLEQQFPTNTLTPDPTGTILIIRGFFEGTEVRL
>Mature_470_residues
MWICPDLRCVRKCHMNFKGRSLAVLCGVLLLGGCGEVNESPTLPGPVQVDPAAFVSAQEYRFTPGSVLETTSLRLDYVNP
RFDNGIPVRTNPLQGSGEARIANVEARILPVNEIPATELTIDSTLRSSTLAIQIGRTTPLVNITAFGPNDGRLSTQFNIA
GLVAISTLPNDQRIRVNTTFRAIRDDRTVLTLTVRRILVSRNGNQVVLEGDSSLIVPTVGVLFENGGPGPGGEILAPGSF
VNPPPPQGPVVAILQTGSFSASFVVRQRGVAGDGTPEDALALFARLNFRPNQAEIVYRPAQVGTQSVLFAPDPTRPNILP
NQLVRIRRLLNGRVQAEFDPANVSTVLNFVQVSPPPNAPTAFDYFFSLRTEREEGGGTPVVLQGIVPATGDFLFRTLAGA
QLSGPFNRLDIGGGTQRGNLNLVFDSTTSAERISGQWFLEQQFPTNTLTPDPTGTILIIRGFFEGTEVRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50632; Mature: 50632

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWICPDLRCVRKCHMNFKGRSLAVLCGVLLLGGCGEVNESPTLPGPVQVDPAAFVSAQEY
CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECHHHHCCCCCE
RFTPGSVLETTSLRLDYVNPRFDNGIPVRTNPLQGSGEARIANVEARILPVNEIPATELT
ECCCCCEEEEEEEEEEECCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEECCCCCCCEEE
IDSTLRSSTLAIQIGRTTPLVNITAFGPNDGRLSTQFNIAGLVAISTLPNDQRIRVNTTF
ECHHCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEEEEECCCCCEEEEEEEE
RAIRDDRTVLTLTVRRILVSRNGNQVVLEGDSSLIVPTVGVLFENGGPGPGGEILAPGSF
EEECCCCEEEEEEEHHHHHCCCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCEECCCCC
VNPPPPQGPVVAILQTGSFSASFVVRQRGVAGDGTPEDALALFARLNFRPNQAEIVYRPA
CCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECH
QVGTQSVLFAPDPTRPNILPNQLVRIRRLLNGRVQAEFDPANVSTVLNFVQVSPPPNAPT
HCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHEEEEEECCCCCCCC
AFDYFFSLRTEREEGGGTPVVLQGIVPATGDFLFRTLAGAQLSGPFNRLDIGGGTQRGNL
CEEEEEEEEECHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCE
NLVFDSTTSAERISGQWFLEQQFPTNTLTPDPTGTILIIRGFFEGTEVRL
EEEEECCCCHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCEECC
>Mature Secondary Structure
MWICPDLRCVRKCHMNFKGRSLAVLCGVLLLGGCGEVNESPTLPGPVQVDPAAFVSAQEY
CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECHHHHCCCCCE
RFTPGSVLETTSLRLDYVNPRFDNGIPVRTNPLQGSGEARIANVEARILPVNEIPATELT
ECCCCCEEEEEEEEEEECCCCCCCCCCEECCCCCCCCCEEEEEEEEEEEECCCCCCCEEE
IDSTLRSSTLAIQIGRTTPLVNITAFGPNDGRLSTQFNIAGLVAISTLPNDQRIRVNTTF
ECHHCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEEEEECCCCCEEEEEEEE
RAIRDDRTVLTLTVRRILVSRNGNQVVLEGDSSLIVPTVGVLFENGGPGPGGEILAPGSF
EEECCCCEEEEEEEHHHHHCCCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCEECCCCC
VNPPPPQGPVVAILQTGSFSASFVVRQRGVAGDGTPEDALALFARLNFRPNQAEIVYRPA
CCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECH
QVGTQSVLFAPDPTRPNILPNQLVRIRRLLNGRVQAEFDPANVSTVLNFVQVSPPPNAPT
HCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHEEEEEECCCCCCCC
AFDYFFSLRTEREEGGGTPVVLQGIVPATGDFLFRTLAGAQLSGPFNRLDIGGGTQRGNL
CEEEEEEEEECHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCCCCE
NLVFDSTTSAERISGQWFLEQQFPTNTLTPDPTGTILIIRGFFEGTEVRL
EEEEECCCCHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA