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The map label for this gene is thf1

Identifier: 86606816

GI number: 86606816

Start: 2191994

End: 2192713

Strand: Reverse

Name: thf1

Synonym: CYA_2176

Alternate gene names: 86606816

Gene position: 2192713-2191994 (Counterclockwise)

Preceding gene: 86606818

Following gene: 86606813

Centisome position: 74.77

GC content: 62.92

Gene sequence:

>720_bases
GTGAACCCTGTTCGTACCCTCTCCGCCACCAAAGCGGCCTTTTTCAGCGCCTACCCTCGTCCGATCAACGCCGCCTACCG
GCGAGTGGTGGAGGAGTTGCTGGTGGAGCTGCACCTGACCACCGTCAACAGCGCCTTCGTCTACGATCCTTTTTTTGCCC
TGGGTCTGGTTACTCTCTACGACAGCCTGATGGAAGCCTACCATCCCCCAGAGCAGCGCGAGGCCATCTTCAACGCCCTC
TGCAAGGCGCTGCACCTGAAGCCGGAGGTGTTGCGCAAGAACGCCCGCGACCTGCTGGAGCTGATGCGCAGCGGGGATCC
CGTCCAGCGATACAACCTGCTCTGTCTCAAGCCGGAGGCAGAAGATGTGGGCGGGCTGAAGGCGATTTTGCAGCGCATGA
CCCAGCCCCCCTACGCCTACAGCCGAGTTTTGGCGGTTGGCCTCTACACGGCCTACGAAGCGGTGGCCACCTCGCTCTAC
AAGGAGCCGGAAGAGCGCACCCGCCACTTTCTGGAGGACGTGATCGGCAACCTACCCTTTTCGCCGGAGCGAGTCAAAAA
AGATCTGGAGCTTTACCGCAGCAACTTGGATCGCCTGAAGCAGGCGCGGGCCATCGTCGAGGAGATGGTGAAAGCGGCCC
GGCGCCAACAGGAGCGCCGCCAATCCACCGCCTCGCTGCCCGAGACTCCCGCCGCCGATCGCAGGGAGTCCAGCGGCTAA

Upstream 100 bases:

>100_bases
CACCATAGCGGAACCGGGGCCCTTGCTTGCCCTCAGAGTCGCTGCAGGGGACAATAGAGGAAAGCAATAAATCTGCCTCA
AGGTCTCTCTTTCTCTGCCT

Downstream 100 bases:

>100_bases
AACCCCCTAGACCAAATAGGGGGCCCACCTGTCCACCACCTCAGGCGAGCCGTACCAGCGCCGCCCGCCTCGACCAGAAT
GGTGACAGTCGGGAAGGGTG

Product: Thf1-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MNPVRTLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLYDSLMEAYHPPEQREAIFNAL
CKALHLKPEVLRKNARDLLELMRSGDPVQRYNLLCLKPEAEDVGGLKAILQRMTQPPYAYSRVLAVGLYTAYEAVATSLY
KEPEERTRHFLEDVIGNLPFSPERVKKDLELYRSNLDRLKQARAIVEEMVKAARRQQERRQSTASLPETPAADRRESSG

Sequences:

>Translated_239_residues
MNPVRTLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLYDSLMEAYHPPEQREAIFNAL
CKALHLKPEVLRKNARDLLELMRSGDPVQRYNLLCLKPEAEDVGGLKAILQRMTQPPYAYSRVLAVGLYTAYEAVATSLY
KEPEERTRHFLEDVIGNLPFSPERVKKDLELYRSNLDRLKQARAIVEEMVKAARRQQERRQSTASLPETPAADRRESSG
>Mature_239_residues
MNPVRTLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLYDSLMEAYHPPEQREAIFNAL
CKALHLKPEVLRKNARDLLELMRSGDPVQRYNLLCLKPEAEDVGGLKAILQRMTQPPYAYSRVLAVGLYTAYEAVATSLY
KEPEERTRHFLEDVIGNLPFSPERVKKDLELYRSNLDRLKQARAIVEEMVKAARRQQERRQSTASLPETPAADRRESSG

Specific function: May be involved in photosynthetic membrane biogenesis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the THF1 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): THF1_SYNJA (Q2JSQ3)

Other databases:

- EMBL:   CP000239
- RefSeq:   YP_475579.1
- STRING:   Q2JSQ3
- GeneID:   3899048
- GenomeReviews:   CP000239_GR
- KEGG:   cya:CYA_2176
- TIGR:   CYA_2176
- eggNOG:   NOG08111
- HOGENOM:   HBG634536
- OMA:   RTVSDTK
- ProtClustDB:   PRK13266
- BioCyc:   SSP321327:CYA_2176-MONOMER
- HAMAP:   MF_01843
- InterPro:   IPR017499
- TIGRFAMs:   TIGR03060

Pfam domain/function: PF11264 ThylakoidFormat

EC number: NA

Molecular weight: Translated: 27257; Mature: 27257

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPVRTLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLY
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
DSLMEAYHPPEQREAIFNALCKALHLKPEVLRKNARDLLELMRSGDPVQRYNLLCLKPEA
HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHCCEEECCCH
EDVGGLKAILQRMTQPPYAYSRVLAVGLYTAYEAVATSLYKEPEERTRHFLEDVIGNLPF
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC
SPERVKKDLELYRSNLDRLKQARAIVEEMVKAARRQQERRQSTASLPETPAADRRESSG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNPVRTLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLY
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
DSLMEAYHPPEQREAIFNALCKALHLKPEVLRKNARDLLELMRSGDPVQRYNLLCLKPEA
HHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHCCEEECCCH
EDVGGLKAILQRMTQPPYAYSRVLAVGLYTAYEAVATSLYKEPEERTRHFLEDVIGNLPF
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC
SPERVKKDLELYRSNLDRLKQARAIVEEMVKAARRQQERRQSTASLPETPAADRRESSG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA