| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606808
Identifier: 86606808
GI number: 86606808
Start: 2180637
End: 2181737
Strand: Reverse
Name: 86606808
Synonym: CYA_2168
Alternate gene names: NA
Gene position: 2181737-2180637 (Counterclockwise)
Preceding gene: 86606809
Following gene: 86606807
Centisome position: 74.39
GC content: 62.31
Gene sequence:
>1101_bases ATGCAGACAGGAGCGCGGCTCCCGAGGAAAGCCTGGACAAGGGAAACCTGGCGCAGGCTGAGGGGGCTGGTGCTGGCGCT GGTGGTGCTGCTGGGGATCGCCTGCTCTAGCCCCGAGGGCTCTGTGACCTCCCCTCCCGGACTGATCCCCCCTCCGCCCG AGCCGGGCAGCCAGTCGCTCCCCATGCCGGTGCGCACTCTGGGCAACAGCCGCTTTAGGTTGCTGGGTTTGAGGGTGGGG GTGGCCGGGAGCGAGGTTGAAGTTTTGCTAGATAGCGGCTCGGCAGGTCTGCGCATTCTGTCCTCGGCGGCGGGGCGCTT TGGCCTGGAGCGGACAGGGATCCCTTCCACGGTAACCTTCGCCGATGGCACGCAATTTCTCGGAGTGCTGGCTCGCGCTC CCTTCAGCTTGGGCGGGATCCAGAGCCGGGAGCCGGTCACGATTCAGTTGATCGACCAAATCACCTGTGTGGAGCCCCTG GTGGCTACCTGCTCCGACAACCTGTTTGGGCCAGGGCGCCCCTTTGCCGGGATCCTCGGCACCTCTTTGGACGAGCGCAG CCCCGATCGCAACTTGTTTAGTCCCCTCACCCGCCTGCCGGGCAATTTCCGCTCTGGGTACATTGTTCAGACAGGGGGGT TCGACTCTGTTCAAGGCCTTTTCACAGTCGGCCTGACGGAGGCCAACACCGCCGGCTTCAGTTTCCGGCAACTGCCCCAG GTGGGTAGCTTTCCCGATGGCACACCCATCTGGCGGGATGAGGCCCTGCAGGTGGCCTACAGCATTGGCAACACTTCTAT TCAAAATGTCCTCAGCCCCACCCTATTTGATAGCGGCGCTTCCGACATCTTCCTCAACGTTCGCCTGTTGGGAGCAGCTC CCTTTCCCACCTCAACCCTACCCCCAGGCTCGGAATGGCGGGCTCTCTTGGAGGGAGCCTTTGACTACCGCATTCGGGTT GGCTTTCCGGTAACGCCCAGCCGGGATCGGATTTTTGTTAACGGCAACCAGAGAGTGCAACTGTTGGGCATGCCCCTGTT TTTCAACGCCGATGTTGCCTTTGATATTGAAAGGGGGCGGATCGGCTTTCGCCTGCGCTGA
Upstream 100 bases:
>100_bases TGCGCGCCTTGGCAGCCCCCTCGGCAAGCTAGGGGCAGGGGGGGTTGGCATAGGCCGGTTTTCCCTGCTCGAGCGCTTGG TGGCTGGAGGAGTGGATCTG
Downstream 100 bases:
>100_bases GGCCGATTCCCTCTTCTGAAGCCTCGAGTTAACTGCGGAGGAAAGTGATGGTTGCCCAAGGGATCCCTGCCCATCGAAGG ACACGCCGCTGGCCCTGGGT
Product: lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MQTGARLPRKAWTRETWRRLRGLVLALVVLLGIACSSPEGSVTSPPGLIPPPPEPGSQSLPMPVRTLGNSRFRLLGLRVG VAGSEVEVLLDSGSAGLRILSSAAGRFGLERTGIPSTVTFADGTQFLGVLARAPFSLGGIQSREPVTIQLIDQITCVEPL VATCSDNLFGPGRPFAGILGTSLDERSPDRNLFSPLTRLPGNFRSGYIVQTGGFDSVQGLFTVGLTEANTAGFSFRQLPQ VGSFPDGTPIWRDEALQVAYSIGNTSIQNVLSPTLFDSGASDIFLNVRLLGAAPFPTSTLPPGSEWRALLEGAFDYRIRV GFPVTPSRDRIFVNGNQRVQLLGMPLFFNADVAFDIERGRIGFRLR
Sequences:
>Translated_366_residues MQTGARLPRKAWTRETWRRLRGLVLALVVLLGIACSSPEGSVTSPPGLIPPPPEPGSQSLPMPVRTLGNSRFRLLGLRVG VAGSEVEVLLDSGSAGLRILSSAAGRFGLERTGIPSTVTFADGTQFLGVLARAPFSLGGIQSREPVTIQLIDQITCVEPL VATCSDNLFGPGRPFAGILGTSLDERSPDRNLFSPLTRLPGNFRSGYIVQTGGFDSVQGLFTVGLTEANTAGFSFRQLPQ VGSFPDGTPIWRDEALQVAYSIGNTSIQNVLSPTLFDSGASDIFLNVRLLGAAPFPTSTLPPGSEWRALLEGAFDYRIRV GFPVTPSRDRIFVNGNQRVQLLGMPLFFNADVAFDIERGRIGFRLR >Mature_366_residues MQTGARLPRKAWTRETWRRLRGLVLALVVLLGIACSSPEGSVTSPPGLIPPPPEPGSQSLPMPVRTLGNSRFRLLGLRVG VAGSEVEVLLDSGSAGLRILSSAAGRFGLERTGIPSTVTFADGTQFLGVLARAPFSLGGIQSREPVTIQLIDQITCVEPL VATCSDNLFGPGRPFAGILGTSLDERSPDRNLFSPLTRLPGNFRSGYIVQTGGFDSVQGLFTVGLTEANTAGFSFRQLPQ VGSFPDGTPIWRDEALQVAYSIGNTSIQNVLSPTLFDSGASDIFLNVRLLGAAPFPTSTLPPGSEWRALLEGAFDYRIRV GFPVTPSRDRIFVNGNQRVQLLGMPLFFNADVAFDIERGRIGFRLR
Specific function: Unknown
COG id: COG1649
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39299; Mature: 39299
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTGARLPRKAWTRETWRRLRGLVLALVVLLGIACSSPEGSVTSPPGLIPPPPEPGSQSL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC PMPVRTLGNSRFRLLGLRVGVAGSEVEVLLDSGSAGLRILSSAAGRFGLERTGIPSTVTF CCCHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEE ADGTQFLGVLARAPFSLGGIQSREPVTIQLIDQITCVEPLVATCSDNLFGPGRPFAGILG CCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHC TSLDERSPDRNLFSPLTRLPGNFRSGYIVQTGGFDSVQGLFTVGLTEANTAGFSFRQLPQ CCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCHHHCCC VGSFPDGTPIWRDEALQVAYSIGNTSIQNVLSPTLFDSGASDIFLNVRLLGAAPFPTSTL CCCCCCCCCCCHHHHHHEEHHCCCHHHHHHHCCHHHCCCCCEEEEEEEEEECCCCCCCCC PPGSEWRALLEGAFDYRIRVGFPVTPSRDRIFVNGNQRVQLLGMPLFFNADVAFDIERGR CCCHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCEEECCCEEEEEECCC IGFRLR EEEEEC >Mature Secondary Structure MQTGARLPRKAWTRETWRRLRGLVLALVVLLGIACSSPEGSVTSPPGLIPPPPEPGSQSL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC PMPVRTLGNSRFRLLGLRVGVAGSEVEVLLDSGSAGLRILSSAAGRFGLERTGIPSTVTF CCCHHHCCCCCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEE ADGTQFLGVLARAPFSLGGIQSREPVTIQLIDQITCVEPLVATCSDNLFGPGRPFAGILG CCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCHHHHC TSLDERSPDRNLFSPLTRLPGNFRSGYIVQTGGFDSVQGLFTVGLTEANTAGFSFRQLPQ CCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCHHHCCC VGSFPDGTPIWRDEALQVAYSIGNTSIQNVLSPTLFDSGASDIFLNVRLLGAAPFPTSTL CCCCCCCCCCCHHHHHHEEHHCCCHHHHHHHCCHHHCCCCCEEEEEEEEEECCCCCCCCC PPGSEWRALLEGAFDYRIRVGFPVTPSRDRIFVNGNQRVQLLGMPLFFNADVAFDIERGR CCCHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCEEECCCEEEEEECCC IGFRLR EEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA