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The map label for this gene is atpH

Identifier: 86606754

GI number: 86606754

Start: 2132048

End: 2132596

Strand: Reverse

Name: atpH

Synonym: CYA_2114

Alternate gene names: 86606754

Gene position: 2132596-2132048 (Counterclockwise)

Preceding gene: 86606755

Following gene: 86606753

Centisome position: 72.72

GC content: 60.66

Gene sequence:

>549_bases
ATGATCAGCAGCACCATGGCCGCCAGAGTGGTGGATCCCTACGCCGAAGCCCTTGTTTCGCTGGCCTCTGCGCAGGGATT
ATTGGATACCTTTGAGGCCGACATCCGTTTCATTGCCGCGGTTGTGCAGGCCACGCCGGAGCTGGGCCAATTCCTCGCCA
GTCCCCTGGTCAAGGCGGAAGCCAAGAAAAACCTGTTGCAGCAGGTGTTTGCCGACCAGATCCACCCGCTGCTGCTGAAC
GCGCTCAAGCTGTTGAGCGACCGTCGCCGTATTATGTTCCTCGGGGCCGTCTGCCAGCGGTTCTTGGAGCTGCAGCGGAA
GCTCAAAAATATCGTCCTGGCCGAGGTGACCACAGCGGTACCTTTGACCGAGGCGCAACAGCAGTCGATCCGCGAGCGGG
TGAGGGACTTCACACAAGCCAGCGGCGTGGAGCTCCAGACCAGCCAAGATCCCACGTTGCTGGGTGGAGTGATCATTAAG
ATTGGATCCCAGGTGATCGACCTTAGCCTGCGCGGCCAGTTGCGCCGGCTGGCGCTGCAGTTAGCCTAG

Upstream 100 bases:

>100_bases
GTGGAGCAGGAGCTGCCGCAACACCTCAACGAGCAGGTGCACCAGCGCCTGATTGAACGGGGGATCCAGATGATTGCCCG
CTAGGAGGAAAGGGGAAGTT

Downstream 100 bases:

>100_bases
ATTGGCCGAGCGTTTTTCCTTAATTTTGGATCCCTTCCCATTCCCTCGAGAGGACTGCCATGCCTACAATTCGCCCAGAC
GAGATCAGCACCATCATCAA

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MISSTMAARVVDPYAEALVSLASAQGLLDTFEADIRFIAAVVQATPELGQFLASPLVKAEAKKNLLQQVFADQIHPLLLN
ALKLLSDRRRIMFLGAVCQRFLELQRKLKNIVLAEVTTAVPLTEAQQQSIRERVRDFTQASGVELQTSQDPTLLGGVIIK
IGSQVIDLSLRGQLRRLALQLA

Sequences:

>Translated_182_residues
MISSTMAARVVDPYAEALVSLASAQGLLDTFEADIRFIAAVVQATPELGQFLASPLVKAEAKKNLLQQVFADQIHPLLLN
ALKLLSDRRRIMFLGAVCQRFLELQRKLKNIVLAEVTTAVPLTEAQQQSIRERVRDFTQASGVELQTSQDPTLLGGVIIK
IGSQVIDLSLRGQLRRLALQLA
>Mature_182_residues
MISSTMAARVVDPYAEALVSLASAQGLLDTFEADIRFIAAVVQATPELGQFLASPLVKAEAKKNLLQQVFADQIHPLLLN
ALKLLSDRRRIMFLGAVCQRFLELQRKLKNIVLAEVTTAVPLTEAQQQSIRERVRDFTQASGVELQTSQDPTLLGGVIIK
IGSQVIDLSLRGQLRRLALQLA

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Homo sapiens, GI4502303, Length=167, Percent_Identity=28.7425149700599, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71984710, Length=172, Percent_Identity=25.5813953488372, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71984717, Length=172, Percent_Identity=25.5813953488372, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24647054, Length=164, Percent_Identity=26.219512195122, Blast_Score=74, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_SYNJA (Q2JSW0)

Other databases:

- EMBL:   CP000239
- RefSeq:   YP_475517.1
- ProteinModelPortal:   Q2JSW0
- SMR:   Q2JSW0
- STRING:   Q2JSW0
- GeneID:   3899161
- GenomeReviews:   CP000239_GR
- KEGG:   cya:CYA_2114
- TIGR:   CYA_2114
- eggNOG:   COG0712
- HOGENOM:   HBG668108
- OMA:   MSTNAIA
- ProtClustDB:   PRK05758
- BioCyc:   SSP321327:CYA_2114-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 19974; Mature: 19974

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSTMAARVVDPYAEALVSLASAQGLLDTFEADIRFIAAVVQATPELGQFLASPLVKAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
AKKNLLQQVFADQIHPLLLNALKLLSDRRRIMFLGAVCQRFLELQRKLKNIVLAEVTTAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PLTEAQQQSIRERVRDFTQASGVELQTSQDPTLLGGVIIKIGSQVIDLSLRGQLRRLALQ
CCHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LA
CC
>Mature Secondary Structure
MISSTMAARVVDPYAEALVSLASAQGLLDTFEADIRFIAAVVQATPELGQFLASPLVKAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
AKKNLLQQVFADQIHPLLLNALKLLSDRRRIMFLGAVCQRFLELQRKLKNIVLAEVTTAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PLTEAQQQSIRERVRDFTQASGVELQTSQDPTLLGGVIIKIGSQVIDLSLRGQLRRLALQ
CCHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA