| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is hemR [H]
Identifier: 86606671
GI number: 86606671
Start: 2046708
End: 2049128
Strand: Reverse
Name: hemR [H]
Synonym: CYA_2031
Alternate gene names: 86606671
Gene position: 2049128-2046708 (Counterclockwise)
Preceding gene: 86606672
Following gene: 86606670
Centisome position: 69.87
GC content: 62.62
Gene sequence:
>2421_bases ATGCGAGTAACCGGTTGGGGCTGGAAGGCGGTGAGCTTGGGGCTGGGCCTGGGGCTGAGTTGGGGATCCCTGGCCCAGGC GCAACCCGCGGCTCGGATCCCTGAGACTCCTTTGCTGGCCCAGGCCACCCCTCGGGGAGCCACCACCATCCAGGAGCAGA TTCGCGAGCTAGAAGCCCAGATCGAAGCTGCCCGCCGGCGGGGGGATCAGGCGGAGGTGGAGCGGCTGCAAGCGGATCTG CAAGTGCTGCGGCAGGGCACCCCCGTCTTCAACCTGCAGCAGGTTACGGTCACCGGCACCCGCACCGAGCGCACCCTGGC CGACTCCCCGGCCACCATCACCGTCATCGACCGGGAGCGGCTGCGGCAGGAGCTTATCCAGAACATCCAGGATCTGGTGC GCTACGAGCCGGGGGTGAGCGTGCGGCGAAATGTCCGCTATGGCCTGCAGGACTTCAACATCCGCGGCCTCGACGCCAAC CGGGTGCTGATCCAGGTGGACGGGATCCGGCAGCCGGAGCGGTTTTCCTTCGGCCCCTTCAACATCGGGCGGGACACCTT TGAGCTGGAGACCCTGAAGACGGTGGAGATCATCCGCGGCCCCGCTTCCACCCTCTACGGCAGCGATGCCTTGGGGGGCG TGGTAACCTACACTACTCTAGACCCGGCGGATCTGCTGGGGGAACGGGACAGCCATGTGGGCCTCTCCAGCCAGTACGAC AGCAAAAACCAAGGCTTTGTCAACACCCTCAGCTTGGCGGGCCGGCAGGGGAACTTGGAAGCCCTGCTCATCTACACCCG CCGCGACGCCAGGGAGCCGGATATCAAAGCGGATCCCAGCTTTAAAGATCGACAAACGGTGGATGGGGACAACGTTTTGG CCAAGCTGGTTTACCGCTTCAGCCCCTTGGAAAGCCTCACCCTGACCGGCGAGTACTTCAACAGCCGCACCACCACCACG TTCTCGCGGCGCAACCTGGATCCCGGCATCAGCTTATTTAGGGAAACCATCGACACCGAGCGCAGCCGCCTCAGTTTGGA GTATCGCTACGCCAACCCTGAGAATCCCGCTTTTGAGTTGGCCACCGCCCAGATTTACTACCAGCCCGCCCGCACCCGCG AGCCCAGCGTGGAAGAGCGCACCATCACCGTGCAGGGCCGACCCGTACCTGTGCGGCGAGATACCTTCAACGAGCTGGTC AGCAACATTTTAGGAGCCAGCCTGCAGGCCCAAAGCCGCTTCCAAACCGGGGATCTCTCCCACCGCCTGGTGTATGGCAT GGAGATTTCCACCACCCGCAACGAACGACCCCGCAACCGTTTTCAGACCAACCTGCAAACCGGAGCGGTAACCCAAAACA TTCCCCCAGACACCTTTCCCACCAAAGATTTTCCCGACTCGGACACCGTCCGTTTTGGGCTGTATGTGCAGGATGAGATC GATTTCGGCGGCGGCAACTTGACGTTGATCCCCGGCATCCGCTACGACACCTACAACCTCACCCCCAGTCCCGATGAAGC TTTCCTCAAAAGTGGGTCAGAAGCGGCCAGCCTCTTTGCCGATGCCGTTTCCCCCAAGCTGGGCCTGGTGTGGAGGATAA ACCCCAACCTTACCTTTACGGCCCAGTACAACACCGGCTTTCGGGCCCCCCAATACAACGAGATCAACAGCGGCTTCACC AACTTGGTCAGCCCCTTCTTTCGCTATCGCACCCTCTCCAACCCCGACTTGCGCCCGGAAACCAGCCAGGGTTTTGAAGT GGGTTTGCGAGGGATCTACCTGCAGGCCAGCTTCAGTTTGGCCGCCTACTACAACACCTACAACGACTTTATCGAGGCGT TCCGGCGGGTGGGATCTGAGCCCTCGCCCCCCGGCCCCCCCGGCAGCCCGCCGCCCCCGCCGGTCATCCTCTTCCAGAGC CAAAACGTCAGCCGCGCCCGCATCTACGGCGTGGAAGCGACAGGGCAATATTTCTTCAGCCCCGACCTAACCGGCTGGAG CCTAAACGGCAGCTTTGCCTGGGCGGTGGGGGACAATCTTACAGAAAACAAGCCCCTGCTTTCGATTGAGCCGCTGACGG CGGTGCTGGGGCTGCACTACGACGATCCCAGCCAGGTGTGGGGGGCGAGGCTGGTGGCCACGCTGGTGGCGGATCCGCGG GATCCGCAGCGGGAGGTGGTGCAAACTAACCCCAACGCTCCCCCGCAGATTCCCTTTGTGCCCAGCGGCTATACGGTGGT GGATCTGCTGGGCTACTACAACCTGGACGACAACTGGCAGCTCAATTTCGGGGTGTTCAACCTCTTCGACGAGAAGTATT TTCTCTACTCCGAGACCCGCACCCTCTTTGTCGGCCCTGAGGTGGAGCGGCGGGCCCAGCCGGGGCGCCATGTGGCCCTC AGCTTCTCCAGCCGCTTCTAG
Upstream 100 bases:
>100_bases CGCAGCGCAGACCCAGCAAGGCCCCTCTGGCTGGGAGGAAAGGGTGTTGAGGCGAAGGTTTGACTTGGTTTTTTGTGGGT TTTTGGGAGAGTGAAACGTT
Downstream 100 bases:
>100_bases GACTCCCCGCCAGCCGTGCCCATCGAGATAGCCCCGAGCCATGCTCGCCGAACCCCCCACTCACACCAACCGGGGATCCG CTTCTTCGGGGAGGGGATCC
Product: TonB-dependent heme/hemoglobin receptor family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 806; Mature: 806
Protein sequence:
>806_residues MRVTGWGWKAVSLGLGLGLSWGSLAQAQPAARIPETPLLAQATPRGATTIQEQIRELEAQIEAARRRGDQAEVERLQADL QVLRQGTPVFNLQQVTVTGTRTERTLADSPATITVIDRERLRQELIQNIQDLVRYEPGVSVRRNVRYGLQDFNIRGLDAN RVLIQVDGIRQPERFSFGPFNIGRDTFELETLKTVEIIRGPASTLYGSDALGGVVTYTTLDPADLLGERDSHVGLSSQYD SKNQGFVNTLSLAGRQGNLEALLIYTRRDAREPDIKADPSFKDRQTVDGDNVLAKLVYRFSPLESLTLTGEYFNSRTTTT FSRRNLDPGISLFRETIDTERSRLSLEYRYANPENPAFELATAQIYYQPARTREPSVEERTITVQGRPVPVRRDTFNELV SNILGASLQAQSRFQTGDLSHRLVYGMEISTTRNERPRNRFQTNLQTGAVTQNIPPDTFPTKDFPDSDTVRFGLYVQDEI DFGGGNLTLIPGIRYDTYNLTPSPDEAFLKSGSEAASLFADAVSPKLGLVWRINPNLTFTAQYNTGFRAPQYNEINSGFT NLVSPFFRYRTLSNPDLRPETSQGFEVGLRGIYLQASFSLAAYYNTYNDFIEAFRRVGSEPSPPGPPGSPPPPPVILFQS QNVSRARIYGVEATGQYFFSPDLTGWSLNGSFAWAVGDNLTENKPLLSIEPLTAVLGLHYDDPSQVWGARLVATLVADPR DPQREVVQTNPNAPPQIPFVPSGYTVVDLLGYYNLDDNWQLNFGVFNLFDEKYFLYSETRTLFVGPEVERRAQPGRHVAL SFSSRF
Sequences:
>Translated_806_residues MRVTGWGWKAVSLGLGLGLSWGSLAQAQPAARIPETPLLAQATPRGATTIQEQIRELEAQIEAARRRGDQAEVERLQADL QVLRQGTPVFNLQQVTVTGTRTERTLADSPATITVIDRERLRQELIQNIQDLVRYEPGVSVRRNVRYGLQDFNIRGLDAN RVLIQVDGIRQPERFSFGPFNIGRDTFELETLKTVEIIRGPASTLYGSDALGGVVTYTTLDPADLLGERDSHVGLSSQYD SKNQGFVNTLSLAGRQGNLEALLIYTRRDAREPDIKADPSFKDRQTVDGDNVLAKLVYRFSPLESLTLTGEYFNSRTTTT FSRRNLDPGISLFRETIDTERSRLSLEYRYANPENPAFELATAQIYYQPARTREPSVEERTITVQGRPVPVRRDTFNELV SNILGASLQAQSRFQTGDLSHRLVYGMEISTTRNERPRNRFQTNLQTGAVTQNIPPDTFPTKDFPDSDTVRFGLYVQDEI DFGGGNLTLIPGIRYDTYNLTPSPDEAFLKSGSEAASLFADAVSPKLGLVWRINPNLTFTAQYNTGFRAPQYNEINSGFT NLVSPFFRYRTLSNPDLRPETSQGFEVGLRGIYLQASFSLAAYYNTYNDFIEAFRRVGSEPSPPGPPGSPPPPPVILFQS QNVSRARIYGVEATGQYFFSPDLTGWSLNGSFAWAVGDNLTENKPLLSIEPLTAVLGLHYDDPSQVWGARLVATLVADPR DPQREVVQTNPNAPPQIPFVPSGYTVVDLLGYYNLDDNWQLNFGVFNLFDEKYFLYSETRTLFVGPEVERRAQPGRHVAL SFSSRF >Mature_806_residues MRVTGWGWKAVSLGLGLGLSWGSLAQAQPAARIPETPLLAQATPRGATTIQEQIRELEAQIEAARRRGDQAEVERLQADL QVLRQGTPVFNLQQVTVTGTRTERTLADSPATITVIDRERLRQELIQNIQDLVRYEPGVSVRRNVRYGLQDFNIRGLDAN RVLIQVDGIRQPERFSFGPFNIGRDTFELETLKTVEIIRGPASTLYGSDALGGVVTYTTLDPADLLGERDSHVGLSSQYD SKNQGFVNTLSLAGRQGNLEALLIYTRRDAREPDIKADPSFKDRQTVDGDNVLAKLVYRFSPLESLTLTGEYFNSRTTTT FSRRNLDPGISLFRETIDTERSRLSLEYRYANPENPAFELATAQIYYQPARTREPSVEERTITVQGRPVPVRRDTFNELV SNILGASLQAQSRFQTGDLSHRLVYGMEISTTRNERPRNRFQTNLQTGAVTQNIPPDTFPTKDFPDSDTVRFGLYVQDEI DFGGGNLTLIPGIRYDTYNLTPSPDEAFLKSGSEAASLFADAVSPKLGLVWRINPNLTFTAQYNTGFRAPQYNEINSGFT NLVSPFFRYRTLSNPDLRPETSQGFEVGLRGIYLQASFSLAAYYNTYNDFIEAFRRVGSEPSPPGPPGSPPPPPVILFQS QNVSRARIYGVEATGQYFFSPDLTGWSLNGSFAWAVGDNLTENKPLLSIEPLTAVLGLHYDDPSQVWGARLVATLVADPR DPQREVVQTNPNAPPQIPFVPSGYTVVDLLGYYNLDDNWQLNFGVFNLFDEKYFLYSETRTLFVGPEVERRAQPGRHVAL SFSSRF
Specific function: This protein is involved in the initial step of iron uptake by binding hemin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=152, Percent_Identity=35.5263157894737, Blast_Score=90, Evalue=7e-19, Organism=Escherichia coli, GI1790405, Length=126, Percent_Identity=34.9206349206349, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR011276 - InterPro: IPR010949 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 90189; Mature: 90189
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 0.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVTGWGWKAVSLGLGLGLSWGSLAQAQPAARIPETPLLAQATPRGATTIQEQIRELEAQ CEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHH IEAARRRGDQAEVERLQADLQVLRQGTPVFNLQQVTVTGTRTERTLADSPATITVIDRER HHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEECCCCCEEEEECHHH LRQELIQNIQDLVRYEPGVSVRRNVRYGLQDFNIRGLDANRVLIQVDGIRQPERFSFGPF HHHHHHHHHHHHHHCCCCCCEEHHCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCCC NIGRDTFELETLKTVEIIRGPASTLYGSDALGGVVTYTTLDPADLLGERDSHVGLSSQYD CCCCCEEEEHHHHEEHHHCCCHHHHCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCC SKNQGFVNTLSLAGRQGNLEALLIYTRRDAREPDIKADPSFKDRQTVDGDNVLAKLVYRF CCCCCCEEEHEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC SPLESLTLTGEYFNSRTTTTFSRRNLDPGISLFRETIDTERSRLSLEYRYANPENPAFEL CCCCEEEEEHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEE ATAQIYYQPARTREPSVEERTITVQGRPVPVRRDTFNELVSNILGASLQAQSRFQTGDLS EEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCC HRLVYGMEISTTRNERPRNRFQTNLQTGAVTQNIPPDTFPTKDFPDSDTVRFGLYVQDEI CEEEEEEEEECCCCCCCHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEEEEEE DFGGGNLTLIPGIRYDTYNLTPSPDEAFLKSGSEAASLFADAVSPKLGLVWRINPNLTFT ECCCCCEEEECCCEEECCCCCCCCHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCEEEE AQYNTGFRAPQYNEINSGFTNLVSPFFRYRTLSNPDLRPETSQGFEVGLRGIYLQASFSL EECCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCEEEEEEEEEEE AAYYNTYNDFIEAFRRVGSEPSPPGPPGSPPPPPVILFQSQNVSRARIYGVEATGQYFFS EEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEECCCEEEC PDLTGWSLNGSFAWAVGDNLTENKPLLSIEPLTAVLGLHYDDPSQVWGARLVATLVADPR CCCCCEEECCEEEEEECCCCCCCCCEEEECCHHHHHEECCCCHHHHHHHHHHHHHHCCCC DPQREVVQTNPNAPPQIPFVPSGYTVVDLLGYYNLDDNWQLNFGVFNLFDEKYFLYSETR CCHHHHHCCCCCCCCCCCCCCCCCCCEEEHHHCCCCCCEEEEEEEEEEECCEEEEEECCE TLFVGPEVERRAQPGRHVALSFSSRF EEEECCCHHHHCCCCCEEEEEECCCC >Mature Secondary Structure MRVTGWGWKAVSLGLGLGLSWGSLAQAQPAARIPETPLLAQATPRGATTIQEQIRELEAQ CEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHH IEAARRRGDQAEVERLQADLQVLRQGTPVFNLQQVTVTGTRTERTLADSPATITVIDRER HHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCEECCCCCEEEEECHHH LRQELIQNIQDLVRYEPGVSVRRNVRYGLQDFNIRGLDANRVLIQVDGIRQPERFSFGPF HHHHHHHHHHHHHHCCCCCCEEHHCCCCCCCCCEECCCCCEEEEEECCCCCCCCCCCCCC NIGRDTFELETLKTVEIIRGPASTLYGSDALGGVVTYTTLDPADLLGERDSHVGLSSQYD CCCCCEEEEHHHHEEHHHCCCHHHHCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCC SKNQGFVNTLSLAGRQGNLEALLIYTRRDAREPDIKADPSFKDRQTVDGDNVLAKLVYRF CCCCCCEEEHEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC SPLESLTLTGEYFNSRTTTTFSRRNLDPGISLFRETIDTERSRLSLEYRYANPENPAFEL CCCCEEEEEHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEE ATAQIYYQPARTREPSVEERTITVQGRPVPVRRDTFNELVSNILGASLQAQSRFQTGDLS EEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCC HRLVYGMEISTTRNERPRNRFQTNLQTGAVTQNIPPDTFPTKDFPDSDTVRFGLYVQDEI CEEEEEEEEECCCCCCCHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEEEEEEE DFGGGNLTLIPGIRYDTYNLTPSPDEAFLKSGSEAASLFADAVSPKLGLVWRINPNLTFT ECCCCCEEEECCCEEECCCCCCCCHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCEEEE AQYNTGFRAPQYNEINSGFTNLVSPFFRYRTLSNPDLRPETSQGFEVGLRGIYLQASFSL EECCCCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCEEEEEEEEEEE AAYYNTYNDFIEAFRRVGSEPSPPGPPGSPPPPPVILFQSQNVSRARIYGVEATGQYFFS EEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEECCCEEEC PDLTGWSLNGSFAWAVGDNLTENKPLLSIEPLTAVLGLHYDDPSQVWGARLVATLVADPR CCCCCEEECCEEEEEECCCCCCCCCEEEECCHHHHHEECCCCHHHHHHHHHHHHHHCCCC DPQREVVQTNPNAPPQIPFVPSGYTVVDLLGYYNLDDNWQLNFGVFNLFDEKYFLYSETR CCHHHHHCCCCCCCCCCCCCCCCCCCEEEHHHCCCCCCEEEEEEEEEEECCEEEEEECCE TLFVGPEVERRAQPGRHVALSFSSRF EEEECCCHHHHCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1425573 [H]