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The map label for this gene is rbgA

Identifier: 86606591

GI number: 86606591

Start: 1957239

End: 1958108

Strand: Reverse

Name: rbgA

Synonym: CYA_1945

Alternate gene names: 86606591

Gene position: 1958108-1957239 (Counterclockwise)

Preceding gene: 86606594

Following gene: 86606590

Centisome position: 66.77

GC content: 62.99

Gene sequence:

>870_bases
ATGAGCTCTCCGCCCATCCAGTGGTATCCCGGCCATGTGGCCAAGGCCATTGGCCAGTTGCGGGAACAATTGCGGCTGGT
GGACGTGGCAATTGAAGTGGTGGACGCGCGGATCCCGCTGGCCAGCCGTCACCCTGAGCTGGACAAGTGGCTGGGGGAAA
AACCTCGCCTCTTGGCGCTTAACCGAGCCGATTCCATTGCGGCAAGGGATCTCAAAGCGTGGCAGGAGCATTTTTCGCAG
CAAGGGATCCCGGTCTATCCCACCAACGGTCAATCGGGAGAAGGGGTGCCCCGCCTCAAGCAAGCCATCTTACAGATGGG
GCAAGCGGTAAACGAGCGGCGGCAACGGTGGGGCATGCGGCCGCGGGCTGTCCGGGCCGTGGTGGTGGGTTTTCCCAATG
TGGGCAAGTCTGCCTTGTTGAATCGACTTTTGGGACGGCGAGCCGTCGAGAGCGCTGCGCGCCCTGGGGTAACCCGGCAA
CTGCAGTGGGTACGGCTAGGGGGGGAGTTGGATTTGCTGGACTCGCCGGGCATCCTCCCGCCTTCGCTGCCGGATCAACA
GGCAGCCTCCCTGCTGGCCATCTGTGATGACATCGGCGCCGCAGCCTACGATCCTGAGCAGGTGGCCGCCTACTTCGTGG
ATCAACTGCTGCAGGTGCAGCCCCAGGCCCAAGCCCTGCTGCAACAGCGCTACGGCTGGCCCGACCCGATCCCCCCTGGC
AGCGTGGCAGTGCAAGATCTCGCAGAGCGGCGGTATCGAGGGGATGCCGAACGAGCGGCAAGGCAAATTCTCAACGACTA
TCGCAAGGGATGGCTAGGGCCTCTAGCTTTGCAAATTCCTCCCAGCTCTAGCCCTCTAGCAAGAGGCTAG

Upstream 100 bases:

>100_bases
TTTTACTCGCCCTGGGATTGGGAAGGAGCGGGCTGGGCAGGCTAAAGTAGATCCTGTCCTTGTTTGCGTAGCCGTCGAGC
TTTTCCAAGGTTTTGGCGGC

Downstream 100 bases:

>100_bases
CTTCATCTGTCTGTATATGTTGCTACGAGATGCGGCAGAGTGAGTGATAGGATGGAACTAGAATACTAACACTGCGCCAG
ATTTTTCCCTGAAGTTTTTC

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MSSPPIQWYPGHVAKAIGQLREQLRLVDVAIEVVDARIPLASRHPELDKWLGEKPRLLALNRADSIAARDLKAWQEHFSQ
QGIPVYPTNGQSGEGVPRLKQAILQMGQAVNERRQRWGMRPRAVRAVVVGFPNVGKSALLNRLLGRRAVESAARPGVTRQ
LQWVRLGGELDLLDSPGILPPSLPDQQAASLLAICDDIGAAAYDPEQVAAYFVDQLLQVQPQAQALLQQRYGWPDPIPPG
SVAVQDLAERRYRGDAERAARQILNDYRKGWLGPLALQIPPSSSPLARG

Sequences:

>Translated_289_residues
MSSPPIQWYPGHVAKAIGQLREQLRLVDVAIEVVDARIPLASRHPELDKWLGEKPRLLALNRADSIAARDLKAWQEHFSQ
QGIPVYPTNGQSGEGVPRLKQAILQMGQAVNERRQRWGMRPRAVRAVVVGFPNVGKSALLNRLLGRRAVESAARPGVTRQ
LQWVRLGGELDLLDSPGILPPSLPDQQAASLLAICDDIGAAAYDPEQVAAYFVDQLLQVQPQAQALLQQRYGWPDPIPPG
SVAVQDLAERRYRGDAERAARQILNDYRKGWLGPLALQIPPSSSPLARG
>Mature_288_residues
SSPPIQWYPGHVAKAIGQLREQLRLVDVAIEVVDARIPLASRHPELDKWLGEKPRLLALNRADSIAARDLKAWQEHFSQQ
GIPVYPTNGQSGEGVPRLKQAILQMGQAVNERRQRWGMRPRAVRAVVVGFPNVGKSALLNRLLGRRAVESAARPGVTRQL
QWVRLGGELDLLDSPGILPPSLPDQQAASLLAICDDIGAAAYDPEQVAAYFVDQLLQVQPQAQALLQQRYGWPDPIPPGS
VAVQDLAERRYRGDAERAARQILNDYRKGWLGPLALQIPPSSSPLARG

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=308, Percent_Identity=29.2207792207792, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI296317324, Length=299, Percent_Identity=25.752508361204, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI9506611, Length=299, Percent_Identity=25.752508361204, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45643129, Length=191, Percent_Identity=26.7015706806283, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI45643127, Length=191, Percent_Identity=26.7015706806283, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI45593130, Length=191, Percent_Identity=26.7015706806283, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI7019419, Length=301, Percent_Identity=23.5880398671096, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI193211047, Length=204, Percent_Identity=34.8039215686275, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17534827, Length=287, Percent_Identity=28.2229965156794, Blast_Score=87, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6324381, Length=254, Percent_Identity=26.7716535433071, Blast_Score=86, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6321339, Length=318, Percent_Identity=23.8993710691824, Blast_Score=78, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6320842, Length=171, Percent_Identity=32.7485380116959, Blast_Score=73, Evalue=6e-14,
Organism=Drosophila melanogaster, GI85815858, Length=312, Percent_Identity=27.5641025641026, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI28572990, Length=187, Percent_Identity=32.0855614973262, Blast_Score=86, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 31838; Mature: 31707

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPPIQWYPGHVAKAIGQLREQLRLVDVAIEVVDARIPLASRHPELDKWLGEKPRLLAL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEE
NRADSIAARDLKAWQEHFSQQGIPVYPTNGQSGEGVPRLKQAILQMGQAVNERRQRWGMR
CCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PRAVRAVVVGFPNVGKSALLNRLLGRRAVESAARPGVTRQLQWVRLGGELDLLDSPGILP
HHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEECCCEEECCCCCCCC
PSLPDQQAASLLAICDDIGAAAYDPEQVAAYFVDQLLQVQPQAQALLQQRYGWPDPIPPG
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
SVAVQDLAERRYRGDAERAARQILNDYRKGWLGPLALQIPPSSSPLARG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
SSPPIQWYPGHVAKAIGQLREQLRLVDVAIEVVDARIPLASRHPELDKWLGEKPRLLAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEE
NRADSIAARDLKAWQEHFSQQGIPVYPTNGQSGEGVPRLKQAILQMGQAVNERRQRWGMR
CCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PRAVRAVVVGFPNVGKSALLNRLLGRRAVESAARPGVTRQLQWVRLGGELDLLDSPGILP
HHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEECCCEEECCCCCCCC
PSLPDQQAASLLAICDDIGAAAYDPEQVAAYFVDQLLQVQPQAQALLQQRYGWPDPIPPG
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
SVAVQDLAERRYRGDAERAARQILNDYRKGWLGPLALQIPPSSSPLARG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]