| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606587
Identifier: 86606587
GI number: 86606587
Start: 1951778
End: 1952932
Strand: Reverse
Name: 86606587
Synonym: CYA_1941
Alternate gene names: NA
Gene position: 1952932-1951778 (Counterclockwise)
Preceding gene: 86606588
Following gene: 86606586
Centisome position: 66.59
GC content: 63.2
Gene sequence:
>1155_bases ATGGAAAGAACTCTAGAAGAAATTAACCGGCGCATTGCCAAAGGCCAGGTGCGGGTGTGGACGGCCCTGGAAGCCAAGGC CAAGCTGGCCACCCTCAGCCTTGAGGAGGCCTTTGAGCAGGTGGATGTGGTAACCACGGGCACCTTTGAGCCGATGGAGT CGTCGGGGGCCATCCTCAACCTGGGCCATACGGATCCGCCGATCAAGATTCGCCAGGCTTGGCTAAATGGGGTGCCCGCC TATGCCGGCTTTGGCGCCGTGGATCTTTACCTAGGGGCAGCCCAGCCCAGCGAGCAAGCCGATCACCCCTACGGGGGCGG CCACGTTATCGCCGATCTGGTGGCCGGCAAGCGGGTGCACCTGCGGGCTGTTGGCCAGGTAACCGACTGCTATCCCCGCG CTGACTACGAGACCACCCTGACGCGGGATCAGCTCAACCAGTTCTACCTGTTCAACCCCCGCAACGCCTACCAAAACTTC ATTGTCGGCGTCAACGGCGGGGATCGGCCCCTGTACACCTATTTGGGCCTGCTGGAGCCGCACCTGGGCAATGCCGTCTA TTCCAATCCAGGTGAGCTCTCCCCCCTCCTCAACGACCCCCTCCTGCGCCGGGTGGGGATCGGCAGCCGCATCTTTCTGG GGGGCGGCATCGGCTACATCGCCTGGGAAGGCACCCAACACTTCCCGCGGCAAAAACGGCTGCCCAACCAAACCCCCATC GGCCCTGCCGCCACCTTGGCCCTCATTGGCGACGCCAAACAGATGCAAGCCGAATGGGTGCGGGGCTGCTACTTCCGCAA CTACGGCCCCAGCTTGATGTTGGGGGTTGGGATCCCCATCCCCATCCTTTCCCCCGCCGATCTGGAGCCCATCGCCATCC GGGATGAGGAGCTGGTGGCGCCGGTGATCGACTTTTCCATCCCCCGGCGGGTGCGCCCCACCTTTGGCCTGGTGAGCTAT GCCCAGCTCAAATCCGGCCACATCACCCTCAACGGCCGCAAGGTGCGCACCGCTCCCCTGGCCAGCCTGCGCCGCTCGAT GCAAGTTGCTGAGATCCTCAAACAATGGATTGTAAGCGGTCAGTTTACGCTCACCCAGCCGGTTGCTCCCCTATCCTTGG ATCGGGAGTTTCTCGCCCAGAACCCCCACCCATAG
Upstream 100 bases:
>100_bases CCTCGAGCGCCTTTGGGCTCTCTAAGCTATTGATATTGATTGGCGCTGTGGCCCCTCTGGGAGGGAGATCTGCCCAGACC CTTGCCATCTTTTGAAGGCG
Downstream 100 bases:
>100_bases TAGGAATCCCCATCTCCCAAACCGGCCATCGGATCCCTGGCAAGGGGTTGTCTTCCAGGCAGTTGCCGCTACCATTACGC CTTAGGTGTTGCCGACAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 384; Mature: 384
Protein sequence:
>384_residues MERTLEEINRRIAKGQVRVWTALEAKAKLATLSLEEAFEQVDVVTTGTFEPMESSGAILNLGHTDPPIKIRQAWLNGVPA YAGFGAVDLYLGAAQPSEQADHPYGGGHVIADLVAGKRVHLRAVGQVTDCYPRADYETTLTRDQLNQFYLFNPRNAYQNF IVGVNGGDRPLYTYLGLLEPHLGNAVYSNPGELSPLLNDPLLRRVGIGSRIFLGGGIGYIAWEGTQHFPRQKRLPNQTPI GPAATLALIGDAKQMQAEWVRGCYFRNYGPSLMLGVGIPIPILSPADLEPIAIRDEELVAPVIDFSIPRRVRPTFGLVSY AQLKSGHITLNGRKVRTAPLASLRRSMQVAEILKQWIVSGQFTLTQPVAPLSLDREFLAQNPHP
Sequences:
>Translated_384_residues MERTLEEINRRIAKGQVRVWTALEAKAKLATLSLEEAFEQVDVVTTGTFEPMESSGAILNLGHTDPPIKIRQAWLNGVPA YAGFGAVDLYLGAAQPSEQADHPYGGGHVIADLVAGKRVHLRAVGQVTDCYPRADYETTLTRDQLNQFYLFNPRNAYQNF IVGVNGGDRPLYTYLGLLEPHLGNAVYSNPGELSPLLNDPLLRRVGIGSRIFLGGGIGYIAWEGTQHFPRQKRLPNQTPI GPAATLALIGDAKQMQAEWVRGCYFRNYGPSLMLGVGIPIPILSPADLEPIAIRDEELVAPVIDFSIPRRVRPTFGLVSY AQLKSGHITLNGRKVRTAPLASLRRSMQVAEILKQWIVSGQFTLTQPVAPLSLDREFLAQNPHP >Mature_384_residues MERTLEEINRRIAKGQVRVWTALEAKAKLATLSLEEAFEQVDVVTTGTFEPMESSGAILNLGHTDPPIKIRQAWLNGVPA YAGFGAVDLYLGAAQPSEQADHPYGGGHVIADLVAGKRVHLRAVGQVTDCYPRADYETTLTRDQLNQFYLFNPRNAYQNF IVGVNGGDRPLYTYLGLLEPHLGNAVYSNPGELSPLLNDPLLRRVGIGSRIFLGGGIGYIAWEGTQHFPRQKRLPNQTPI GPAATLALIGDAKQMQAEWVRGCYFRNYGPSLMLGVGIPIPILSPADLEPIAIRDEELVAPVIDFSIPRRVRPTFGLVSY AQLKSGHITLNGRKVRTAPLASLRRSMQVAEILKQWIVSGQFTLTQPVAPLSLDREFLAQNPHP
Specific function: Unknown
COG id: COG1900
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000644 - InterPro: IPR002708 - InterPro: IPR016426 - ProDom: PD011569 [H]
Pfam domain/function: PF00571 CBS; PF01837 DUF39 [H]
EC number: NA
Molecular weight: Translated: 42218; Mature: 42218
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERTLEEINRRIAKGQVRVWTALEAKAKLATLSLEEAFEQVDVVTTGTFEPMESSGAILN CCHHHHHHHHHHHCCCEEEEEEECCHHHHHEEEHHHHHHHHCEEECCCCCCCCCCCCEEE LGHTDPPIKIRQAWLNGVPAYAGFGAVDLYLGAAQPSEQADHPYGGGHVIADLVAGKRVH CCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCEEE LRAVGQVTDCYPRADYETTLTRDQLNQFYLFNPRNAYQNFIVGVNGGDRPLYTYLGLLEP EEEECCHHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHCC HLGNAVYSNPGELSPLLNDPLLRRVGIGSRIFLGGGIGYIAWEGTQHFPRQKRLPNQTPI CCCCCEECCCCCCCHHHCCHHHHHHCCCCEEEEECCEEEEEECCCCCCCHHHCCCCCCCC GPAATLALIGDAKQMQAEWVRGCYFRNYGPSLMLGVGIPIPILSPADLEPIAIRDEELVA CHHHHEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEECCHHHHH PVIDFSIPRRVRPTFGLVSYAQLKSGHITLNGRKVRTAPLASLRRSMQVAEILKQWIVSG HHHCCCCCCCCCCCHHHHHHHHHCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCC QFTLTQPVAPLSLDREFLAQNPHP CEEEECCCCCCCCCHHHHCCCCCC >Mature Secondary Structure MERTLEEINRRIAKGQVRVWTALEAKAKLATLSLEEAFEQVDVVTTGTFEPMESSGAILN CCHHHHHHHHHHHCCCEEEEEEECCHHHHHEEEHHHHHHHHCEEECCCCCCCCCCCCEEE LGHTDPPIKIRQAWLNGVPAYAGFGAVDLYLGAAQPSEQADHPYGGGHVIADLVAGKRVH CCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCEEE LRAVGQVTDCYPRADYETTLTRDQLNQFYLFNPRNAYQNFIVGVNGGDRPLYTYLGLLEP EEEECCHHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHCC HLGNAVYSNPGELSPLLNDPLLRRVGIGSRIFLGGGIGYIAWEGTQHFPRQKRLPNQTPI CCCCCEECCCCCCCHHHCCHHHHHHCCCCEEEEECCEEEEEECCCCCCCHHHCCCCCCCC GPAATLALIGDAKQMQAEWVRGCYFRNYGPSLMLGVGIPIPILSPADLEPIAIRDEELVA CHHHHEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEEECCHHHHH PVIDFSIPRRVRPTFGLVSYAQLKSGHITLNGRKVRTAPLASLRRSMQVAEILKQWIVSG HHHCCCCCCCCCCCHHHHHHHHHCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHCC QFTLTQPVAPLSLDREFLAQNPHP CEEEECCCCCCCCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]