Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

Click here to switch to the map view.

The map label for this gene is 86606557

Identifier: 86606557

GI number: 86606557

Start: 1920107

End: 1920781

Strand: Reverse

Name: 86606557

Synonym: CYA_1910

Alternate gene names: NA

Gene position: 1920781-1920107 (Counterclockwise)

Preceding gene: 86606560

Following gene: 86606549

Centisome position: 65.49

GC content: 55.26

Gene sequence:

>675_bases
ATGTTTGAGGTCGAGAGCCGAACTGCCCCGCTCAAGTTCTTGATTGTCGAGGATCATCCCGAGGTTGCCCAAAACAATTG
CGAATGGCTGCAACGGCTTGCAGCCGATGCTCAGTGCATCACAGTCTCCAACCCGATGGACGCCATCCTGCGCCTGCAGC
GGGAACAGCCGGACTTGGTAGTAGCCGACTTGCTCTACGGCCAAACCAGCGGCGAACAGTCTGCCGAGCCGGGCCTAGAG
TTCTTGCGCCATATTTTCGAGAACTACCCCACCCTGAACGTGATGGTTTATTCCAGCGAGCCGCTGCTGCTAACTCCCCT
GGTGGGCCTAATCAGCAAGCACCAGGGCGGATTTGCCGCCGTCAACAAAATGGAGCGGCGCAGTGTCTTCTTGGAAGGAG
CCAAAAGTGCCCTCAATGGGGAATTGCGCATGCCGCGAGAGTTGCGCGGCTTAACAAAGCTGACGGAGCGGGAAATCGAG
GTCTTGAACCTGCTCTGCAAAGAGGCCCTCACCGACCAGGCCATCGCCGACCGCATTCACACGAGCAAAAAAACCGTACA
AAACTGTATTCAAAGGCTCAAAGAGAAACTGGATATCTTTGGCTCTGAAGATGAGATCAACGCTCGCGTTGCCATGTGTA
TGGCAGCCGTTCAGAAAAAGCTTATCCAGTGGTAG

Upstream 100 bases:

>100_bases
TTGGGGCTACACTAGGGTAGTTTGTCGGTGGGATCCCTAAACTGCAAAGGGGTTTTGGCCGTCCCCCCGCAGCCGACGCT
GGATTTGGAGGAGTGGATCG

Downstream 100 bases:

>100_bases
TTCATTTAACCTCGCGTAAGAGTAGACAGAGAGGGTAGAATATCTTCTCGAAAGGGAACCTCGTTTTGATTTACCCTCTC
CAGCTCAGCCAACATGAGAG

Product: response regulator

Products: NA

Alternate protein names: Response Regulator Receiver Domain Protein; Two Component LuxR Family Transcriptional Regulator; Response Regulator Receiver Domain-Containing Protein; Response Regulator; Two Component Transcriptional Regulator LuxR Family; Response Regulator Receiver Protein

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MFEVESRTAPLKFLIVEDHPEVAQNNCEWLQRLAADAQCITVSNPMDAILRLQREQPDLVVADLLYGQTSGEQSAEPGLE
FLRHIFENYPTLNVMVYSSEPLLLTPLVGLISKHQGGFAAVNKMERRSVFLEGAKSALNGELRMPRELRGLTKLTEREIE
VLNLLCKEALTDQAIADRIHTSKKTVQNCIQRLKEKLDIFGSEDEINARVAMCMAAVQKKLIQW

Sequences:

>Translated_224_residues
MFEVESRTAPLKFLIVEDHPEVAQNNCEWLQRLAADAQCITVSNPMDAILRLQREQPDLVVADLLYGQTSGEQSAEPGLE
FLRHIFENYPTLNVMVYSSEPLLLTPLVGLISKHQGGFAAVNKMERRSVFLEGAKSALNGELRMPRELRGLTKLTEREIE
VLNLLCKEALTDQAIADRIHTSKKTVQNCIQRLKEKLDIFGSEDEINARVAMCMAAVQKKLIQW
>Mature_224_residues
MFEVESRTAPLKFLIVEDHPEVAQNNCEWLQRLAADAQCITVSNPMDAILRLQREQPDLVVADLLYGQTSGEQSAEPGLE
FLRHIFENYPTLNVMVYSSEPLLLTPLVGLISKHQGGFAAVNKMERRSVFLEGAKSALNGELRMPRELRGLTKLTEREIE
VLNLLCKEALTDQAIADRIHTSKKTVQNCIQRLKEKLDIFGSEDEINARVAMCMAAVQKKLIQW

Specific function: Unknown

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25305; Mature: 25305

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEVESRTAPLKFLIVEDHPEVAQNNCEWLQRLAADAQCITVSNPMDAILRLQREQPDLV
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEE
VADLLYGQTSGEQSAEPGLEFLRHIFENYPTLNVMVYSSEPLLLTPLVGLISKHQGGFAA
HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCHHH
VNKMERRSVFLEGAKSALNGELRMPRELRGLTKLTEREIEVLNLLCKEALTDQAIADRIH
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSKKTVQNCIQRLKEKLDIFGSEDEINARVAMCMAAVQKKLIQW
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFEVESRTAPLKFLIVEDHPEVAQNNCEWLQRLAADAQCITVSNPMDAILRLQREQPDLV
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEE
VADLLYGQTSGEQSAEPGLEFLRHIFENYPTLNVMVYSSEPLLLTPLVGLISKHQGGFAA
HHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCHHH
VNKMERRSVFLEGAKSALNGELRMPRELRGLTKLTEREIEVLNLLCKEALTDQAIADRIH
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSKKTVQNCIQRLKEKLDIFGSEDEINARVAMCMAAVQKKLIQW
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA