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The map label for this gene is kaiC

Identifier: 86606547

GI number: 86606547

Start: 1910603

End: 1912207

Strand: Reverse

Name: kaiC

Synonym: CYA_1900

Alternate gene names: 86606547

Gene position: 1912207-1910603 (Counterclockwise)

Preceding gene: 86606548

Following gene: 86606546

Centisome position: 65.2

GC content: 58.44

Gene sequence:

>1605_bases
ATGAACCAACCATTGGAACCTTCTGAGTCAGAAAAGCTGCAAGGTAACGCCGCGGAGGGGATCCCATCGACCTACTTCCT
GGGCGGGCCCGAGCCGCGGGGGATCCCGAAAAAACAGACGGGTATCGAGGGTTTTGAAGACATCAGCCACGGCGGGCTGC
CCCTGGGCCGCACCACCTTGGTCAGCGGTACCTCCGGCACCGGCAAAACTCTGTTTGCCCTGCAGTTTCTCTACAACGGC
ATTGTCAAGTACCAGGAGCCAGGGATCTTTGTTACTTTTGAGGAGACCCCTGCCGACATCATTCGCAACGCCGCCAGCTT
CGGCTGGGATCTGCAGGCCCTCATCGACAAGGGGCAGCTCTTTATTCTGGATGCTTCGCCGGATCCGGAGGGCTACGAGG
TAAGCGGCAATTTCGATTTGTCGGCCCTCATCGAGCGCATCCAATATGCCATTCGCAAATACAAAGCCAAGCGGGTGGCC
ATCGACTCGGTAACGGCCATCTTTCAGCAGTATGAGCCGGCGGGCGTGGTGCGGCGGGAGCTGTTTCGCCTGACAGCCCG
CCTCAAGCAGGCCAACGTCACCACGGTCATGACCACCGAGCGCACTGAGGAGTACGGCCCCATCGCCCGCTATGGGGTGG
AGGAGTTCGTCTCCGACAACGTGGTGATCCTGCGCAACATCCTGGAGGGGGAGAAGCGGCGGCGTACCATCGAGATCCTG
AAGCTGCGGGGCACCACCCACATGAAGGGGGAATATCCCTTCACCATCACCAACGAGGGGATCAACATCTTCCCGCTGGG
AGCGATGCAACTGACGCAGCGCTCTTCCAACGTGCGCGTCTCTTCCGGCATCGAGAAGCTGGACGAGATGTGCGGCGGTG
GCTTTTTCAAAGACTCGATTATCTTGGCTACCGGCGCCACCGGCACAGGCAAGACCTCGCTGGTGAGCAAGTTCCTCGAG
CGAGGCTGCCTAAATGGGGAGCGCTGCATTCTCTTTGCCTACGAAGAGTCGCGGGCCCAGCTTGCCCGCAATGCCTCTTC
CTGGGGCATCGACTTTGAGGAGTTTGAGCGGCAAGGCCTCCTTAAGATCATCTGCGCCTACCCCGAGTCCGCCGGCCTGG
AAGACCACCTGCAGAAGATCAAAACCGAGATGATGGCCTTCAAGCCCTCCCGCATGGCCATCGACTCGCTGTCGGCGCTG
GCGCGGGGTGTGAGCCAAAATGCTTTTCGACAGTTTGTTATCGGCGTAACCGGCCTGGCCAAGCAGGAGGAGATCACCGG
CTTTTTCACCAACACCACCGATCAATTCATGGGATCCCATTCCATTACCGAGTCGCACATCTCCACCATCACCGACACAA
TCATTCTGCTGCAGTATGTGGAGATTCGCGGCGAGATGGCACGGGCGCTCAACGTCTTTAAAATGCGGGGATCCTGGCAT
GACAAGGGCATCCGCGAGTACCTCATCTCGGATTCGGGGATTCAAATTCGCGATTCCTTCCGCGGCTACGAGCGGATTAT
CAGCGGATCCCCGACCCGCATCAATGTGGATGAGAAGAACGAGCTCTCTCGAATTGTGCAAAATGTCCAATCTTTGGACG
AGTAG

Upstream 100 bases:

>100_bases
GGCGATCTGTCCAACCGAGAGAAGGTGCTCATCGGCCTAGATCTGCTCTACGAAGAATTGGACGAAGAGGCTTAGGACAG
GTTTTAGGGGAGAGAGGGGC

Downstream 100 bases:

>100_bases
GGGCTTGGGCTTGACCGGCGCCAACTGCCCCTAACATTTTGCAACCATAGGTTTTTGGCTGCGTGCATCCGCCAGGGGCT
CCTTTGTTCAGCGATCTTCC

Product: circadian clock protein KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MNQPLEPSESEKLQGNAAEGIPSTYFLGGPEPRGIPKKQTGIEGFEDISHGGLPLGRTTLVSGTSGTGKTLFALQFLYNG
IVKYQEPGIFVTFEETPADIIRNAASFGWDLQALIDKGQLFILDASPDPEGYEVSGNFDLSALIERIQYAIRKYKAKRVA
IDSVTAIFQQYEPAGVVRRELFRLTARLKQANVTTVMTTERTEEYGPIARYGVEEFVSDNVVILRNILEGEKRRRTIEIL
KLRGTTHMKGEYPFTITNEGINIFPLGAMQLTQRSSNVRVSSGIEKLDEMCGGGFFKDSIILATGATGTGKTSLVSKFLE
RGCLNGERCILFAYEESRAQLARNASSWGIDFEEFERQGLLKIICAYPESAGLEDHLQKIKTEMMAFKPSRMAIDSLSAL
ARGVSQNAFRQFVIGVTGLAKQEEITGFFTNTTDQFMGSHSITESHISTITDTIILLQYVEIRGEMARALNVFKMRGSWH
DKGIREYLISDSGIQIRDSFRGYERIISGSPTRINVDEKNELSRIVQNVQSLDE

Sequences:

>Translated_534_residues
MNQPLEPSESEKLQGNAAEGIPSTYFLGGPEPRGIPKKQTGIEGFEDISHGGLPLGRTTLVSGTSGTGKTLFALQFLYNG
IVKYQEPGIFVTFEETPADIIRNAASFGWDLQALIDKGQLFILDASPDPEGYEVSGNFDLSALIERIQYAIRKYKAKRVA
IDSVTAIFQQYEPAGVVRRELFRLTARLKQANVTTVMTTERTEEYGPIARYGVEEFVSDNVVILRNILEGEKRRRTIEIL
KLRGTTHMKGEYPFTITNEGINIFPLGAMQLTQRSSNVRVSSGIEKLDEMCGGGFFKDSIILATGATGTGKTSLVSKFLE
RGCLNGERCILFAYEESRAQLARNASSWGIDFEEFERQGLLKIICAYPESAGLEDHLQKIKTEMMAFKPSRMAIDSLSAL
ARGVSQNAFRQFVIGVTGLAKQEEITGFFTNTTDQFMGSHSITESHISTITDTIILLQYVEIRGEMARALNVFKMRGSWH
DKGIREYLISDSGIQIRDSFRGYERIISGSPTRINVDEKNELSRIVQNVQSLDE
>Mature_534_residues
MNQPLEPSESEKLQGNAAEGIPSTYFLGGPEPRGIPKKQTGIEGFEDISHGGLPLGRTTLVSGTSGTGKTLFALQFLYNG
IVKYQEPGIFVTFEETPADIIRNAASFGWDLQALIDKGQLFILDASPDPEGYEVSGNFDLSALIERIQYAIRKYKAKRVA
IDSVTAIFQQYEPAGVVRRELFRLTARLKQANVTTVMTTERTEEYGPIARYGVEEFVSDNVVILRNILEGEKRRRTIEIL
KLRGTTHMKGEYPFTITNEGINIFPLGAMQLTQRSSNVRVSSGIEKLDEMCGGGFFKDSIILATGATGTGKTSLVSKFLE
RGCLNGERCILFAYEESRAQLARNASSWGIDFEEFERQGLLKIICAYPESAGLEDHLQKIKTEMMAFKPSRMAIDSLSAL
ARGVSQNAFRQFVIGVTGLAKQEEITGFFTNTTDQFMGSHSITESHISTITDTIILLQYVEIRGEMARALNVFKMRGSWH
DKGIREYLISDSGIQIRDSFRGYERIISGSPTRINVDEKNELSRIVQNVQSLDE

Specific function: Core component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by actin

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 59423; Mature: 59423

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS51146 KAIC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQPLEPSESEKLQGNAAEGIPSTYFLGGPEPRGIPKKQTGIEGFEDISHGGLPLGRTTL
CCCCCCCCCCHHCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCHHHHCCCCCCCCCEEE
VSGTSGTGKTLFALQFLYNGIVKYQEPGIFVTFEETPADIIRNAASFGWDLQALIDKGQL
EECCCCCCHHHHHHHHHHHHHHEECCCCEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCE
FILDASPDPEGYEVSGNFDLSALIERIQYAIRKYKAKRVAIDSVTAIFQQYEPAGVVRRE
EEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LFRLTARLKQANVTTVMTTERTEEYGPIARYGVEEFVSDNVVILRNILEGEKRRRTIEIL
HHHHHHHHHHCCCEEEEEECCCHHCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHCEEEEE
KLRGTTHMKGEYPFTITNEGINIFPLGAMQLTQRSSNVRVSSGIEKLDEMCGGGFFKDSI
EECCCCCCCCCCCEEEECCCEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHCCCEECCCE
ILATGATGTGKTSLVSKFLERGCLNGERCILFAYEESRAQLARNASSWGIDFEEFERQGL
EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHCCCCCCCCHHHHHHCCC
LKIICAYPESAGLEDHLQKIKTEMMAFKPSRMAIDSLSALARGVSQNAFRQFVIGVTGLA
EEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KQEEITGFFTNTTDQFMGSHSITESHISTITDTIILLQYVEIRGEMARALNVFKMRGSWH
CHHHHCEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DKGIREYLISDSGIQIRDSFRGYERIISGSPTRINVDEKNELSRIVQNVQSLDE
HHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQPLEPSESEKLQGNAAEGIPSTYFLGGPEPRGIPKKQTGIEGFEDISHGGLPLGRTTL
CCCCCCCCCCHHCCCCCCCCCCCCEECCCCCCCCCCCHHCCCCCHHHHCCCCCCCCCEEE
VSGTSGTGKTLFALQFLYNGIVKYQEPGIFVTFEETPADIIRNAASFGWDLQALIDKGQL
EECCCCCCHHHHHHHHHHHHHHEECCCCEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCE
FILDASPDPEGYEVSGNFDLSALIERIQYAIRKYKAKRVAIDSVTAIFQQYEPAGVVRRE
EEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LFRLTARLKQANVTTVMTTERTEEYGPIARYGVEEFVSDNVVILRNILEGEKRRRTIEIL
HHHHHHHHHHCCCEEEEEECCCHHCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHCEEEEE
KLRGTTHMKGEYPFTITNEGINIFPLGAMQLTQRSSNVRVSSGIEKLDEMCGGGFFKDSI
EECCCCCCCCCCCEEEECCCEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHCCCEECCCE
ILATGATGTGKTSLVSKFLERGCLNGERCILFAYEESRAQLARNASSWGIDFEEFERQGL
EEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHCCCCCCCCHHHHHHCCC
LKIICAYPESAGLEDHLQKIKTEMMAFKPSRMAIDSLSALARGVSQNAFRQFVIGVTGLA
EEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
KQEEITGFFTNTTDQFMGSHSITESHISTITDTIILLQYVEIRGEMARALNVFKMRGSWH
CHHHHCEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DKGIREYLISDSGIQIRDSFRGYERIISGSPTRINVDEKNELSRIVQNVQSLDE
HHHHHHHHHCCCCCEEHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12477935 [H]