| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is apcE [H]
Identifier: 86606502
GI number: 86606502
Start: 1852542
End: 1855241
Strand: Reverse
Name: apcE [H]
Synonym: CYA_1851
Alternate gene names: 86606502
Gene position: 1855241-1852542 (Counterclockwise)
Preceding gene: 86606504
Following gene: 86606498
Centisome position: 63.26
GC content: 61.93
Gene sequence:
>2700_bases ATGGGTATCAACGCATCTGGCGGCGCAGTCGTCTCCAGCCCCCGTCTTTACCAAACCGTGCCCCTCTCCACCATCTCCCA GGCAGAACAGCAGGATCGCTACCTCTCGCGCACCGAGCTGGATCGCCTTGACGACTTTTTCTCCAGCGGTCTGAAGCGGC TGCAGATTGCCGAGGTCATCGCCGCCAACTCCGAAATCATTGTCAGCCGGGCTGCCAACCGCATCTTCACCGGCGGCTCC CCCATGGCCTACCTGGAGCGGCCAGAAGTCACTCAAGACGAGAAAGAAGCCTTTAAGCTGGGCACCGCCTTCTATGTGGA GTCCACGGGTGGCTTCCTCGAGGCCATCCGCAATCTCTTCAGCGCCAGCGGCGTGGAGATCCCGCCCAACTTCCGCCCCA TCAACATCTCCCGCTACGGGGCTGCCAACATGCGCAAGTCCCTGCGGGATCTAAGCTGGTTCCTGCGCTATGTCACCTAC GCCCTGGTGGCCGGGGATCCCAACATCCTTGTGGTTAACACCCGGGGCCTGCGGGAGATCATCGAAAACGCCTGCTCTGC CGAGGCCACCATTGTCGCCATCCAAGAGATGAAGCGGGCCTCAGCCAGCTACTTCCGCAAAGATGGCGAGGCGGTGGCCA TCATCAACCAGTATTTCGACGTGCTCTTGAGCGAGTTCATTGCCCCTGCTCCCTCCGACAAGCTGCGGCAGCGCAACGCC AGCACCGCCGATGGCCTGCCCTTGCAAGGGCTACAGCTACCCCAGGTTTACAACTTGGCCGCAGAAAAGGTTCCCGTCTT TGCCATGAAGCCGGGGCTTTCCAATGCTGAGAAAGAAGAGGTCATCAAAGCCGCCTACCGGCAGGTGTTCGAGCGGGATA TCCGCCGTGCCTATGGCCTTAAGCTGGCCGACCTGGAGTCGAAGGTGAAAAACGGCGAGATCTCCATGAAGGAGTTTATC CGCCGCCTGGGCAAATCCGAACTCTACCGCAAGCAGTTCTACGAGCCCTACATCAACAGCCGCGTTGTGGAGCTGGCCTT CCGCCACTTCCTGGGACGGGCACCAGAGACCCGTGAAGAGGTGCAGACCTACTTTGCCATCGTCTCCAGCAAGGGCCTGG CCGGCTTGGTGGATGCGCTGGTGGACAGCCGCGAGTACGGCGACTACTTCGGCGAGGAGACGGTGCCCTACCTGCGCAAG CTGGGGGTGGAAGCCCAAACCAGCGCCAACTGGGGGCCCAAGTTTGACCTCTACAACTACGCGGCTCCGCGCCGCAAGGT GCCCCAATTCATTACCCTCTTTGCCCGCTACAACCGCCCCCTGCCGGATCAGCACGCCTACGGTGTCGGCAACGACCCGC TGGAGATCCAATTTGGCGCCATCTTCCCCAAAGAAACCCGCTCCCTCAACGCCAGCCCCGCCCCCTTCAACAAGGATGTC AAGCGCATCCTTATTCGGCGCGGCTTTGCCCTCACCAACGAGCGCACCAATCCCAAGGCGGCAGGGGATCCCGGCAGCCT TGGCCCCAAAGTCTTCAAGCTTACCCAAACCCCTGGCGATCGCAGCCGGCGTTTGGGGGTGCGGGCCGGGGTTGTTGGCA GCGAAGTCTCGACCCAGGCGGTGATCCGCGCCTGCTACCAGCAGGTGTACGGCTATGTGCCCTATGAAGGCCAACGGCTA ACCCGCTGGGAGATCAAGCTGGAGTCGGGCGAGATTACCGTCAAAGAGTTTGTCCGCCAGTTGGCCAAGTCAGATCTGTT CCGCAACAAGTACTGGTCTAGTCTCTATGTCTGCAAGGCCATCGAGTTCATCCACCGCAAGCTGCTGGGCCGGCCCACCT ACGGCCGGCAGGAGATGAACCGGCTGTTTGACATCGCCTCCAAGCAGGGCTTCTACGCCGTGGTGGACGCCATCCTCGAC AGCGAGGAGTACCAGCAGGTCTTCGGGGAAGACGTCGTGCCCTACGAGCGCTACCTCACCCCTGCCGGTCTAGCGCGGCG GCGCATGCGCCCCGGATCCAGCGACATGGCCGTGGTCACCAGGCCCATCCGCACCGACGACGATATCCCCCTCTTTGTCA AGCTGGGCCAGCCCCAGGACAAGCCCTCCGGCGAGCTGGAGATCCAGCGGCGAGTCCAGCAGGGGGTGCCCAAGGTGCGC CAGGAGGTACCCATCTTCAAGCTCACCAGCCTGGCCAACAAAGCCGAGGTCAACAACCTCATCCGCGCCGCCTACCGGCA GATCTTCGAGCGCGACATGGACATCTACAACATCAGCGCCGAGCTCAGCTCTGCCGAGTCCAAGCTGCGCAATGGCGAGA TCACCGTCAAGGAGTTCGTCGAGGCGCTGGGGTGCTCGGAACTGTACCGCTCCGAGTTCTACGCTCCCTATCCCAATACC AAGGTGATCGAGCTGGGCACCAAGCACTTCCTGGGCCGCGCACCCCTAAACCAGCAGGAGATCCGCAAGTACAACCAGAT CTTGGCCACCCAGGGGTTGAAGGCCTTCGTGCGCGCCCTGCTCAACACCCAGGAGTATCGCGATCTCTTCGGCGAGGACA CGGTGCCCTACCGCCGCTTCCCCACCTTGCCGGCGGCCAACTTCCCCAACACCCAAGAGCTGTATGGCCGCCTCACCAAG CAAAACAAGGAGCTCGTGGTGCCCAGTTTCAGACCTGTTGGCAGCAACGATCGCAGCTAG
Upstream 100 bases:
>100_bases TGGGGGCCGGTTTAGCTAAGTCCATGGGTCAGCCCCTTTCCCGGGGCATCCTCCCTGAGCCTTGTCGGCAGTTTTTCGAT AAACGGAGTTTAAGAGAGCG
Downstream 100 bases:
>100_bases CTCAACCCCCCTCTCCCCTGGTGGGAGAGGAAAACCATTAGCTCCACACAGGCAGAGGGGACTGGGCTGTGTAGCCTAAG TGCTGCAGGGCAGCGGGGGT
Product: phycobilisome 120 kDa linker polypeptide, core
Products: NA
Alternate protein names: Anchor polypeptide; PBS-anchor protein; Phycobilisome linker polypeptide [H]
Number of amino acids: Translated: 899; Mature: 898
Protein sequence:
>899_residues MGINASGGAVVSSPRLYQTVPLSTISQAEQQDRYLSRTELDRLDDFFSSGLKRLQIAEVIAANSEIIVSRAANRIFTGGS PMAYLERPEVTQDEKEAFKLGTAFYVESTGGFLEAIRNLFSASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTY ALVAGDPNILVVNTRGLREIIENACSAEATIVAIQEMKRASASYFRKDGEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA STADGLPLQGLQLPQVYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGLKLADLESKVKNGEISMKEFI RRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREEVQTYFAIVSSKGLAGLVDALVDSREYGDYFGEETVPYLRK LGVEAQTSANWGPKFDLYNYAAPRRKVPQFITLFARYNRPLPDQHAYGVGNDPLEIQFGAIFPKETRSLNASPAPFNKDV KRILIRRGFALTNERTNPKAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGVVGSEVSTQAVIRACYQQVYGYVPYEGQRL TRWEIKLESGEITVKEFVRQLAKSDLFRNKYWSSLYVCKAIEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILD SEEYQQVFGEDVVPYERYLTPAGLARRRMRPGSSDMAVVTRPIRTDDDIPLFVKLGQPQDKPSGELEIQRRVQQGVPKVR QEVPIFKLTSLANKAEVNNLIRAAYRQIFERDMDIYNISAELSSAESKLRNGEITVKEFVEALGCSELYRSEFYAPYPNT KVIELGTKHFLGRAPLNQQEIRKYNQILATQGLKAFVRALLNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTK QNKELVVPSFRPVGSNDRS
Sequences:
>Translated_899_residues MGINASGGAVVSSPRLYQTVPLSTISQAEQQDRYLSRTELDRLDDFFSSGLKRLQIAEVIAANSEIIVSRAANRIFTGGS PMAYLERPEVTQDEKEAFKLGTAFYVESTGGFLEAIRNLFSASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTY ALVAGDPNILVVNTRGLREIIENACSAEATIVAIQEMKRASASYFRKDGEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA STADGLPLQGLQLPQVYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGLKLADLESKVKNGEISMKEFI RRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREEVQTYFAIVSSKGLAGLVDALVDSREYGDYFGEETVPYLRK LGVEAQTSANWGPKFDLYNYAAPRRKVPQFITLFARYNRPLPDQHAYGVGNDPLEIQFGAIFPKETRSLNASPAPFNKDV KRILIRRGFALTNERTNPKAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGVVGSEVSTQAVIRACYQQVYGYVPYEGQRL TRWEIKLESGEITVKEFVRQLAKSDLFRNKYWSSLYVCKAIEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILD SEEYQQVFGEDVVPYERYLTPAGLARRRMRPGSSDMAVVTRPIRTDDDIPLFVKLGQPQDKPSGELEIQRRVQQGVPKVR QEVPIFKLTSLANKAEVNNLIRAAYRQIFERDMDIYNISAELSSAESKLRNGEITVKEFVEALGCSELYRSEFYAPYPNT KVIELGTKHFLGRAPLNQQEIRKYNQILATQGLKAFVRALLNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTK QNKELVVPSFRPVGSNDRS >Mature_898_residues GINASGGAVVSSPRLYQTVPLSTISQAEQQDRYLSRTELDRLDDFFSSGLKRLQIAEVIAANSEIIVSRAANRIFTGGSP MAYLERPEVTQDEKEAFKLGTAFYVESTGGFLEAIRNLFSASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTYA LVAGDPNILVVNTRGLREIIENACSAEATIVAIQEMKRASASYFRKDGEAVAIINQYFDVLLSEFIAPAPSDKLRQRNAS TADGLPLQGLQLPQVYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGLKLADLESKVKNGEISMKEFIR RLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREEVQTYFAIVSSKGLAGLVDALVDSREYGDYFGEETVPYLRKL GVEAQTSANWGPKFDLYNYAAPRRKVPQFITLFARYNRPLPDQHAYGVGNDPLEIQFGAIFPKETRSLNASPAPFNKDVK RILIRRGFALTNERTNPKAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGVVGSEVSTQAVIRACYQQVYGYVPYEGQRLT RWEIKLESGEITVKEFVRQLAKSDLFRNKYWSSLYVCKAIEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILDS EEYQQVFGEDVVPYERYLTPAGLARRRMRPGSSDMAVVTRPIRTDDDIPLFVKLGQPQDKPSGELEIQRRVQQGVPKVRQ EVPIFKLTSLANKAEVNNLIRAAYRQIFERDMDIYNISAELSSAESKLRNGEITVKEFVEALGCSELYRSEFYAPYPNTK VIELGTKHFLGRAPLNQQEIRKYNQILATQGLKAFVRALLNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQ NKELVVPSFRPVGSNDRS
Specific function: This protein is postulated to act both as terminal energy acceptor (by its phycobilin-like domains) and as a linker polypeptide (by its repeats and arms) that stabilizes the phycobilisome core architecture. Has intrinsic bilin lyase activity [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Anchors the phycobilisome perpendicularly to the cytoplasmic surface of the thylakoid membrane (By similarity) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 PBS-linker domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009050 - InterPro: IPR001297 - InterPro: IPR012128 - ProDom: PD000852 [H]
Pfam domain/function: PF00427 PBS_linker_poly; PF00502 Phycobilisome [H]
EC number: NA
Molecular weight: Translated: 101678; Mature: 101547
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGINASGGAVVSSPRLYQTVPLSTISQAEQQDRYLSRTELDRLDDFFSSGLKRLQIAEVI CCCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AANSEIIVSRAANRIFTGGSPMAYLERPEVTQDEKEAFKLGTAFYVESTGGFLEAIRNLF HCCCHHHHHHHCCCEECCCCCCEECCCCCCCCCHHHHHHHCCEEEEECCCHHHHHHHHHH SASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTYALVAGDPNILVVNTRGLREI HCCCCCCCCCCCEECCHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCHHHHHH IENACSAEATIVAIQEMKRASASYFRKDGEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCHHHHHCCC STADGLPLQGLQLPQVYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGL CCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC KLADLESKVKNGEISMKEFIRRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREE CHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH VQTYFAIVSSKGLAGLVDALVDSREYGDYFGEETVPYLRKLGVEAQTSANWGPKFDLYNY HHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC AAPRRKVPQFITLFARYNRPLPDQHAYGVGNDPLEIQFGAIFPKETRSLNASPAPFNKDV CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCHHHH KRILIRRGFALTNERTNPKAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGVVGSEVSTQA HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCHHHCCCCCHHHHHH VIRACYQQVYGYVPYEGQRLTRWEIKLESGEITVKEFVRQLAKSDLFRNKYWSSLYVCKA HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH IEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILDSEEYQQVFGEDVVPYERYLT HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHCC PAGLARRRMRPGSSDMAVVTRPIRTDDDIPLFVKLGQPQDKPSGELEIQRRVQQGVPKVR HHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCHHHH QEVPIFKLTSLANKAEVNNLIRAAYRQIFERDMDIYNISAELSSAESKLRNGEITVKEFV HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEHHHHH EALGCSELYRSEFYAPYPNTKVIELGTKHFLGRAPLNQQEIRKYNQILATQGLKAFVRAL HHHCHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQNKELVVPSFRPVGSNDRS HCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCC >Mature Secondary Structure GINASGGAVVSSPRLYQTVPLSTISQAEQQDRYLSRTELDRLDDFFSSGLKRLQIAEVI CCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AANSEIIVSRAANRIFTGGSPMAYLERPEVTQDEKEAFKLGTAFYVESTGGFLEAIRNLF HCCCHHHHHHHCCCEECCCCCCEECCCCCCCCCHHHHHHHCCEEEEECCCHHHHHHHHHH SASGVEIPPNFRPINISRYGAANMRKSLRDLSWFLRYVTYALVAGDPNILVVNTRGLREI HCCCCCCCCCCCEECCHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCHHHHHH IENACSAEATIVAIQEMKRASASYFRKDGEAVAIINQYFDVLLSEFIAPAPSDKLRQRNA HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCHHHHHCCC STADGLPLQGLQLPQVYNLAAEKVPVFAMKPGLSNAEKEEVIKAAYRQVFERDIRRAYGL CCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC KLADLESKVKNGEISMKEFIRRLGKSELYRKQFYEPYINSRVVELAFRHFLGRAPETREE CHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH VQTYFAIVSSKGLAGLVDALVDSREYGDYFGEETVPYLRKLGVEAQTSANWGPKFDLYNY HHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC AAPRRKVPQFITLFARYNRPLPDQHAYGVGNDPLEIQFGAIFPKETRSLNASPAPFNKDV CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCCCHHHH KRILIRRGFALTNERTNPKAAGDPGSLGPKVFKLTQTPGDRSRRLGVRAGVVGSEVSTQA HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCHHHCCCCCHHHHHH VIRACYQQVYGYVPYEGQRLTRWEIKLESGEITVKEFVRQLAKSDLFRNKYWSSLYVCKA HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH IEFIHRKLLGRPTYGRQEMNRLFDIASKQGFYAVVDAILDSEEYQQVFGEDVVPYERYLT HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHCC PAGLARRRMRPGSSDMAVVTRPIRTDDDIPLFVKLGQPQDKPSGELEIQRRVQQGVPKVR HHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCHHHH QEVPIFKLTSLANKAEVNNLIRAAYRQIFERDMDIYNISAELSSAESKLRNGEITVKEFV HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEHHHHH EALGCSELYRSEFYAPYPNTKVIELGTKHFLGRAPLNQQEIRKYNQILATQGLKAFVRAL HHHCHHHHHHHHCCCCCCCCEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LNTQEYRDLFGEDTVPYRRFPTLPAANFPNTQELYGRLTKQNKELVVPSFRPVGSNDRS HCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11759840; 8665889 [H]