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The map label for this gene is ylmH [H]

Identifier: 86606443

GI number: 86606443

Start: 1789887

End: 1790675

Strand: Reverse

Name: ylmH [H]

Synonym: CYA_1789

Alternate gene names: 86606443

Gene position: 1790675-1789887 (Counterclockwise)

Preceding gene: 86606444

Following gene: 86606438

Centisome position: 61.06

GC content: 60.46

Gene sequence:

>789_bases
ATGCTGCCCAGAACCGAACTACTGAAAGGAGCGGAGTATCGAGAAACCTTGGCGCGCATTCTGGATCTGGGGGAGCAAGC
CCTCAAAACCTGGCAAGTGGTCTGGAGTGACTTTCTCTCCCCGGCAGAAGTAGCCGAGGTACAAAGCCGGTTGCACAACT
TGGCCGAACTGCAGGTGATGGCCTGGGGAGGCTATGCCCAGGCAGAGCGGCAACGCCTAGCCCTGGCCCGCCCTGAGGTC
AGCCTGGAGGTGGAAGGCGCAGAAGGGATCCCCTTGGCCGCCGTTCAAATCCAAGGAAACTTTCTTTTCGACCCGGCCAC
CCACCGCGACTTTTTGGGAGCCCTTTTGGCGACGGGAATTGCCCGCGAGAAGGTGGGAGACATCCTCGTGGTGGGCGAAT
TCGGGGCCCAGGCCATCGTTGTGCCGGAGCTGGTGGACTATCTCAGCCTCAACCTAACCCAGGTGCGCAGCGTGCCCGTC
AAGGTCAGCCGGATCCCTCTCAGCCAGTTGAAGGTTCAACCGCCGCGGGTGAAGTCCATCACCAGCGTGGAAGCCTCTTT
GCGCCTGGATGCAGTGGCCTCGGCAGGATTTGGCCTGTCTCGCAGCAAGATGGTGGAAGAGATCCAGCGGGGAGAGGTGC
GGGTTAATTGGAAGCCGATTACCCAAGCCAGCTACACCGTCGGCCCCCAGGATTGGATTGCCATTCGCGGTCGCGGTCGG
CTGCAAATTGAAGAGGTGGCCGAGACGAAAAAGGGCCGCTTTCGCATCCAGATGAAGCGGTATCTCTAG

Upstream 100 bases:

>100_bases
TCCTCTGCCTTAACCGCTTGGCTACGCCCGCCAGGATCCTGGGGATCTAGCTTAGCATGGGACAAACAGAACAGAACCGC
AAAGATTGAAGCGCCCCAAC

Downstream 100 bases:

>100_bases
GTTTTTGGAGATCGGCTGCCCGCCTGAGCCGGGGCAAGATCGCGGCTCCTGGCAAATGTTAGGAAAAAGGGAAGAAGGCC
CAAGGATAGAGCAAATACTC

Product: S4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MLPRTELLKGAEYRETLARILDLGEQALKTWQVVWSDFLSPAEVAEVQSRLHNLAELQVMAWGGYAQAERQRLALARPEV
SLEVEGAEGIPLAAVQIQGNFLFDPATHRDFLGALLATGIAREKVGDILVVGEFGAQAIVVPELVDYLSLNLTQVRSVPV
KVSRIPLSQLKVQPPRVKSITSVEASLRLDAVASAGFGLSRSKMVEEIQRGEVRVNWKPITQASYTVGPQDWIAIRGRGR
LQIEEVAETKKGRFRIQMKRYL

Sequences:

>Translated_262_residues
MLPRTELLKGAEYRETLARILDLGEQALKTWQVVWSDFLSPAEVAEVQSRLHNLAELQVMAWGGYAQAERQRLALARPEV
SLEVEGAEGIPLAAVQIQGNFLFDPATHRDFLGALLATGIAREKVGDILVVGEFGAQAIVVPELVDYLSLNLTQVRSVPV
KVSRIPLSQLKVQPPRVKSITSVEASLRLDAVASAGFGLSRSKMVEEIQRGEVRVNWKPITQASYTVGPQDWIAIRGRGR
LQIEEVAETKKGRFRIQMKRYL
>Mature_262_residues
MLPRTELLKGAEYRETLARILDLGEQALKTWQVVWSDFLSPAEVAEVQSRLHNLAELQVMAWGGYAQAERQRLALARPEV
SLEVEGAEGIPLAAVQIQGNFLFDPATHRDFLGALLATGIAREKVGDILVVGEFGAQAIVVPELVDYLSLNLTQVRSVPV
KVSRIPLSQLKVQPPRVKSITSVEASLRLDAVASAGFGLSRSKMVEEIQRGEVRVNWKPITQASYTVGPQDWIAIRGRGR
LQIEEVAETKKGRFRIQMKRYL

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29091; Mature: 29091

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPRTELLKGAEYRETLARILDLGEQALKTWQVVWSDFLSPAEVAEVQSRLHNLAELQVM
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEE
AWGGYAQAERQRLALARPEVSLEVEGAEGIPLAAVQIQGNFLFDPATHRDFLGALLATGI
EECCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCEEECCCCHHHHHHHHHHHHH
AREKVGDILVVGEFGAQAIVVPELVDYLSLNLTQVRSVPVKVSRIPLSQLKVQPPRVKSI
HHHHHCCEEEEECCCCCEEEHHHHHHHHHCCHHHHHCCCEEEEECCHHHHCCCCCCCHHH
TSVEASLRLDAVASAGFGLSRSKMVEEIQRGEVRVNWKPITQASYTVGPQDWIAIRGRGR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEECCCCEEECCCCCEEEECCCCC
LQIEEVAETKKGRFRIQMKRYL
EEHHHHHHCCCCEEEEEEECCC
>Mature Secondary Structure
MLPRTELLKGAEYRETLARILDLGEQALKTWQVVWSDFLSPAEVAEVQSRLHNLAELQVM
CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEE
AWGGYAQAERQRLALARPEVSLEVEGAEGIPLAAVQIQGNFLFDPATHRDFLGALLATGI
EECCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEECCEEECCCCHHHHHHHHHHHHH
AREKVGDILVVGEFGAQAIVVPELVDYLSLNLTQVRSVPVKVSRIPLSQLKVQPPRVKSI
HHHHHCCEEEEECCCCCEEEHHHHHHHHHCCHHHHHCCCEEEEECCHHHHCCCCCCCHHH
TSVEASLRLDAVASAGFGLSRSKMVEEIQRGEVRVNWKPITQASYTVGPQDWIAIRGRGR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEEECCCCEEECCCCCEEEECCCCC
LQIEEVAETKKGRFRIQMKRYL
EEHHHHHHCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]