| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is glmS
Identifier: 86606209
GI number: 86606209
Start: 1552061
End: 1553908
Strand: Reverse
Name: glmS
Synonym: CYA_1543
Alternate gene names: 86606209
Gene position: 1553908-1552061 (Counterclockwise)
Preceding gene: 86606210
Following gene: 86606206
Centisome position: 52.98
GC content: 62.82
Gene sequence:
>1848_bases ATGTGTGGCATTGTCGGCTATGTGGGCTTTCAGTGGGCTGCCCCCATTCTGGTGGAGGGCCTACGCACCTTGGAGTATCG CGGCTATGACTCCGCAGGCATTGCCACCGTGGATCCAGAAGAAGGCTTGAGGATCGTGCGGGCCGCCGGCAAGCTGCACA ACCTGGTGGTGAAACTCACTACAAACATGCCCACAGCCAAGGTGGGGATTGGGCATACCCGCTGGGCCACTCACGGCGGC ATTAGCGAAGAAAATGCCCACCCCCACTGCGACGTCCAGGGGCGCGTCGTGGTTATTCAAAACGGCATTGTGGAGAACTA CCTGGAGCTAAAGGAAGAGCTGCTGCGGCGAGGGGTTACCTTTCGCTCTCAAACCGATACCGAAGTCATTGCCCAACTGC TCGGTCTCTACGTCGAGGAGCTGGGATCCTTTGAGGTGGCCTTTGGCAAAGTGATGGGACGGCTGCGGGGGGGAAATGCC GTGGTGGCTTTGGATCGGGAGGCGCCGGATCGGCTGATTGCCGCCCGCCTGGGCAATGCCGGGGCTGTGGTGATTGGGGA GGGGGAAGGGGAAAATTTTGTGGCCTCAGATCTGCCTGCCATCATCCGCCACACCCGCAGGGTGGTGTTTCTGGAAGATG GAGAGATGGCCATCCTCACCGACTCCAGCGTGCGCTATCAGCGCATTACCGGCGAGGAGCTGCGCAAAACCCCCCTTACC GTGGCCTGGGATCCGGTCTCGGCGGCCAAGGGCGGCTACAAGCACTTCATGCAAAAAGAGATCCACGAGCAGCCGCGCAC CATCACCGAGACGCTGCGGGGGCGGGTGGATCTGGAAGCAGGCCGGGTGAACTTGGAGGGGCTGGCCCTGACAGAAGCGC AACTGGCTCAGGTGGAGCAGATCCACGCTGTGGCCTGCGGCACTGCCTGGCACGCCTGCCTGGTGCTCAAGTACTTCATT GAGAGCCTGGCCCGCACCCCGGTGCAGGTGGACTACGCTTCCGAGTTTCGCTACCGCCAGCCGGTGCTGCGTCCCCACAG CCTGCTGGTGGCCCTCACCCAGTCCGGCGAGACGGTGGATACGCTGGCGGCCATGAGCGAGGCCCGCACTCAGGGGATCC CCACCCTGGCCATCGTCAACGCCATCGGATCCCAGGCCACTCGTCTGGCGGATGCCGGGGTGATCTACATCCACGCCGGG CCGGAGATCGCCGTCGCCTCCACCAAGGTGTTTACCGGCATGCTGGTGGCAGGATACCTGCTGGCCCTGCAACTGGCCCA GGCCAAAGGGATCCTCAGCCCGGCCCAGATCCGATCCCACCTGCAAGCTTTAATCGAGCTGCCGGGCAAGATCAGCCTGT TGTTGAAAGACGCCGCCCTCTACGAGCAGTTGGCGGAGCAGTACCACCACGTCACCGACATGCTCTACCTGGGCCGCTGG GTCAACGCCCCCATAGCCCTGGAGGGGGCCTTAAAAATGAAAGAGGTCAGCTACATCCACGCCGAGGGCTACCCAGCAGG GGAGATGAAGCATGGCCCCATTGCCCTCATCGACGAGCGCATGCCGGTGGTGTGTATTGCCACCCGCGATCCCGTCTACG AAAAAATGCTCTCCAACATCGAGCAGGTGCGGGCGCGGGGCGGGCGAGTCATTGCCCTGATCAATCCGGAAGATACCCAG GTCCGGGAAAAAGCCGACCACGTCATCGAGGTGCCCAGCACCACACCTCTGCTGTCGGCGGTTTTGAACGTCATCCCCCT GCAGCTGTTTGCCTACGCCATGGCGCTGCGCCGCGGGGCCGATGTGGATCAGCCCCGCAACCTGGCCAAGTCGGTAACCG TCGAGTAG
Upstream 100 bases:
>100_bases TCCCCTAGCAGCGGCAAAAGCCATTGAAGGGATCCCGAAGCTGGGGTAGGCTTTGCGGGTATAGGACGCCGCGCCGTCGA CCAGGGTTGAGGTGTGAGGA
Downstream 100 bases:
>100_bases CGTCTGCCAACCTTGTCACCGCCGGCCTCTGGCTTTTGCAAAATCGGGCAGATCACGTCCTCCTGGGCCGTCGGTTCCGC TGGGATCCGCCAATCGGAAA
Product: glucosamine--fructose-6-phosphate aminotransferase, isomerizing
Products: NA
Alternate protein names: D-fructose-6-phosphate amidotransferase; GFAT; Glucosamine-6-phosphate synthase; Hexosephosphate aminotransferase; L-glutamine-D-fructose-6-phosphate amidotransferase [H]
Number of amino acids: Translated: 615; Mature: 615
Protein sequence:
>615_residues MCGIVGYVGFQWAAPILVEGLRTLEYRGYDSAGIATVDPEEGLRIVRAAGKLHNLVVKLTTNMPTAKVGIGHTRWATHGG ISEENAHPHCDVQGRVVVIQNGIVENYLELKEELLRRGVTFRSQTDTEVIAQLLGLYVEELGSFEVAFGKVMGRLRGGNA VVALDREAPDRLIAARLGNAGAVVIGEGEGENFVASDLPAIIRHTRRVVFLEDGEMAILTDSSVRYQRITGEELRKTPLT VAWDPVSAAKGGYKHFMQKEIHEQPRTITETLRGRVDLEAGRVNLEGLALTEAQLAQVEQIHAVACGTAWHACLVLKYFI ESLARTPVQVDYASEFRYRQPVLRPHSLLVALTQSGETVDTLAAMSEARTQGIPTLAIVNAIGSQATRLADAGVIYIHAG PEIAVASTKVFTGMLVAGYLLALQLAQAKGILSPAQIRSHLQALIELPGKISLLLKDAALYEQLAEQYHHVTDMLYLGRW VNAPIALEGALKMKEVSYIHAEGYPAGEMKHGPIALIDERMPVVCIATRDPVYEKMLSNIEQVRARGGRVIALINPEDTQ VREKADHVIEVPSTTPLLSAVLNVIPLQLFAYAMALRRGADVDQPRNLAKSVTVE
Sequences:
>Translated_615_residues MCGIVGYVGFQWAAPILVEGLRTLEYRGYDSAGIATVDPEEGLRIVRAAGKLHNLVVKLTTNMPTAKVGIGHTRWATHGG ISEENAHPHCDVQGRVVVIQNGIVENYLELKEELLRRGVTFRSQTDTEVIAQLLGLYVEELGSFEVAFGKVMGRLRGGNA VVALDREAPDRLIAARLGNAGAVVIGEGEGENFVASDLPAIIRHTRRVVFLEDGEMAILTDSSVRYQRITGEELRKTPLT VAWDPVSAAKGGYKHFMQKEIHEQPRTITETLRGRVDLEAGRVNLEGLALTEAQLAQVEQIHAVACGTAWHACLVLKYFI ESLARTPVQVDYASEFRYRQPVLRPHSLLVALTQSGETVDTLAAMSEARTQGIPTLAIVNAIGSQATRLADAGVIYIHAG PEIAVASTKVFTGMLVAGYLLALQLAQAKGILSPAQIRSHLQALIELPGKISLLLKDAALYEQLAEQYHHVTDMLYLGRW VNAPIALEGALKMKEVSYIHAEGYPAGEMKHGPIALIDERMPVVCIATRDPVYEKMLSNIEQVRARGGRVIALINPEDTQ VREKADHVIEVPSTTPLLSAVLNVIPLQLFAYAMALRRGADVDQPRNLAKSVTVE >Mature_615_residues MCGIVGYVGFQWAAPILVEGLRTLEYRGYDSAGIATVDPEEGLRIVRAAGKLHNLVVKLTTNMPTAKVGIGHTRWATHGG ISEENAHPHCDVQGRVVVIQNGIVENYLELKEELLRRGVTFRSQTDTEVIAQLLGLYVEELGSFEVAFGKVMGRLRGGNA VVALDREAPDRLIAARLGNAGAVVIGEGEGENFVASDLPAIIRHTRRVVFLEDGEMAILTDSSVRYQRITGEELRKTPLT VAWDPVSAAKGGYKHFMQKEIHEQPRTITETLRGRVDLEAGRVNLEGLALTEAQLAQVEQIHAVACGTAWHACLVLKYFI ESLARTPVQVDYASEFRYRQPVLRPHSLLVALTQSGETVDTLAAMSEARTQGIPTLAIVNAIGSQATRLADAGVIYIHAG PEIAVASTKVFTGMLVAGYLLALQLAQAKGILSPAQIRSHLQALIELPGKISLLLKDAALYEQLAEQYHHVTDMLYLGRW VNAPIALEGALKMKEVSYIHAEGYPAGEMKHGPIALIDERMPVVCIATRDPVYEKMLSNIEQVRARGGRVIALINPEDTQ VREKADHVIEVPSTTPLLSAVLNVIPLQLFAYAMALRRGADVDQPRNLAKSVTVE
Specific function: Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source [H]
COG id: COG0449
COG function: function code M; Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 SIS domains [H]
Homologues:
Organism=Homo sapiens, GI4826742, Length=687, Percent_Identity=35.6622998544396, Blast_Score=392, Evalue=1e-109, Organism=Homo sapiens, GI205277386, Length=685, Percent_Identity=36.2043795620438, Blast_Score=389, Evalue=1e-108, Organism=Homo sapiens, GI29570798, Length=149, Percent_Identity=32.8859060402685, Blast_Score=70, Evalue=5e-12, Organism=Escherichia coli, GI1790167, Length=617, Percent_Identity=45.7050243111831, Blast_Score=496, Evalue=1e-141, Organism=Escherichia coli, GI1788651, Length=148, Percent_Identity=30.4054054054054, Blast_Score=70, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17539970, Length=721, Percent_Identity=36.1997226074896, Blast_Score=382, Evalue=1e-106, Organism=Caenorhabditis elegans, GI17532899, Length=721, Percent_Identity=35.506241331484, Blast_Score=380, Evalue=1e-105, Organism=Caenorhabditis elegans, GI17532897, Length=734, Percent_Identity=34.7411444141689, Blast_Score=369, Evalue=1e-102, Organism=Saccharomyces cerevisiae, GI6322745, Length=435, Percent_Identity=40.9195402298851, Blast_Score=317, Evalue=2e-87, Organism=Saccharomyces cerevisiae, GI6323731, Length=430, Percent_Identity=33.0232558139535, Blast_Score=223, Evalue=7e-59, Organism=Saccharomyces cerevisiae, GI6323730, Length=206, Percent_Identity=37.8640776699029, Blast_Score=122, Evalue=1e-28, Organism=Drosophila melanogaster, GI21357745, Length=687, Percent_Identity=35.9534206695779, Blast_Score=384, Evalue=1e-107, Organism=Drosophila melanogaster, GI28573187, Length=154, Percent_Identity=29.8701298701299, Blast_Score=68, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000583 - InterPro: IPR017932 - InterPro: IPR005855 - InterPro: IPR001347 [H]
Pfam domain/function: PF00310 GATase_2; PF01380 SIS [H]
EC number: =2.6.1.16 [H]
Molecular weight: Translated: 67078; Mature: 67078
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCGIVGYVGFQWAAPILVEGLRTLEYRGYDSAGIATVDPEEGLRIVRAAGKLHNLVVKLT CCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHEEEEEEE TNMPTAKVGIGHTRWATHGGISEENAHPHCDVQGRVVVIQNGIVENYLELKEELLRRGVT CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC FRSQTDTEVIAQLLGLYVEELGSFEVAFGKVMGRLRGGNAVVALDREAPDRLIAARLGNA CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCC GAVVIGEGEGENFVASDLPAIIRHTRRVVFLEDGEMAILTDSSVRYQRITGEELRKTPLT CEEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCCEEEEECCCCEEEECCCHHHHCCCCE VAWDPVSAAKGGYKHFMQKEIHEQPRTITETLRGRVDLEAGRVNLEGLALTEAQLAQVEQ EEECCHHHCCCHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCEEECEEEECHHHHHHHHH IHAVACGTAWHACLVLKYFIESLARTPVQVDYASEFRYRQPVLRPHSLLVALTQSGETVD HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCCEEEEEEECCCCHHH TLAAMSEARTQGIPTLAIVNAIGSQATRLADAGVIYIHAGPEIAVASTKVFTGMLVAGYL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHHHHHH LALQLAQAKGILSPAQIRSHLQALIELPGKISLLLKDAALYEQLAEQYHHVTDMLYLGRW HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH VNAPIALEGALKMKEVSYIHAEGYPAGEMKHGPIALIDERMPVVCIATRDPVYEKMLSNI CCCCEEEECCHHHHHEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHH EQVRARGGRVIALINPEDTQVREKADHVIEVPSTTPLLSAVLNVIPLQLFAYAMALRRGA HHHHHCCCEEEEEECCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC DVDQPRNLAKSVTVE CCCCHHHHHHHCCCC >Mature Secondary Structure MCGIVGYVGFQWAAPILVEGLRTLEYRGYDSAGIATVDPEEGLRIVRAAGKLHNLVVKLT CCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHEEEEEEE TNMPTAKVGIGHTRWATHGGISEENAHPHCDVQGRVVVIQNGIVENYLELKEELLRRGVT CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCC FRSQTDTEVIAQLLGLYVEELGSFEVAFGKVMGRLRGGNAVVALDREAPDRLIAARLGNA CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCC GAVVIGEGEGENFVASDLPAIIRHTRRVVFLEDGEMAILTDSSVRYQRITGEELRKTPLT CEEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCCEEEEECCCCEEEECCCHHHHCCCCE VAWDPVSAAKGGYKHFMQKEIHEQPRTITETLRGRVDLEAGRVNLEGLALTEAQLAQVEQ EEECCHHHCCCHHHHHHHHHHHHCCHHHHHHHCCCEEEECCCEEECEEEECHHHHHHHHH IHAVACGTAWHACLVLKYFIESLARTPVQVDYASEFRYRQPVLRPHSLLVALTQSGETVD HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCCCEEEEEEECCCCHHH TLAAMSEARTQGIPTLAIVNAIGSQATRLADAGVIYIHAGPEIAVASTKVFTGMLVAGYL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHHHHHHHHHHHH LALQLAQAKGILSPAQIRSHLQALIELPGKISLLLKDAALYEQLAEQYHHVTDMLYLGRW HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH VNAPIALEGALKMKEVSYIHAEGYPAGEMKHGPIALIDERMPVVCIATRDPVYEKMLSNI CCCCEEEECCHHHHHEEEEEECCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHHH EQVRARGGRVIALINPEDTQVREKADHVIEVPSTTPLLSAVLNVIPLQLFAYAMALRRGA HHHHHCCCEEEEEECCCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC DVDQPRNLAKSVTVE CCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA