Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86606082

Identifier: 86606082

GI number: 86606082

Start: 1420078

End: 1420917

Strand: Reverse

Name: 86606082

Synonym: CYA_1413

Alternate gene names: NA

Gene position: 1420917-1420078 (Counterclockwise)

Preceding gene: 86606083

Following gene: 86606075

Centisome position: 48.45

GC content: 60.83

Gene sequence:

>840_bases
ATGCACTGGAAAGGTCGGGTTGCCTACTTGGCAACCCTGCATCGCAAAGAGCAGGTGATCGGCCCTCTCTTGGCCCACCA
CCTGGGGATCCAGGTGCAAGTGATACCTCTGGACACCGACCAACTGGGCACCTTCTCGCGGGAGCGGCCTCGGCCAGGGG
ATCCCATCCACACCCTACGCCTGAAAATTGAGAGAGCCCGCCAAGCTCATCCCGCCTCTTTGGTTTTGGCCAGCGAGGGA
TCCTTTGGCCCCCACCCTCAGATCCCTTGGATTCCTTTGAACCAGGAATGGGTCATGCTCAAGGTTTTTGAACCGGGCGC
GGATCCCTTGGAGCTGGTGGGCTACGCAGAAAGCACCCAAACCAACTTCAGCCATCGCTGGGTGCAGAGCTGGGCAGAAG
CGCTCGACTTTGCCCAAAAAGTAGGTTTCCCGCAGCACGGTCTAATCGCCCTCGATCAACCGGAAAACCCCCAAGTTATC
CACAAAGGGATCCAAGACGAAGCTACCCTGAAGCAGGTGGTAGAAGAGCTGCTGGCCCGCCAGGGAGGGCTGCACCTGGA
AACCGATATGCGGGCCCTGTACAACCCAACCCGCCTACAGGTGATCGCGGCAGCCACCCAAAACCTCATCGCCAAAGCCC
AAAGCCTCTGCCCGGCCTGCGGGATCCCTGGCTACTGGCGCATCCGTTCGGTCTCTGGGCTGCCCTGCGGCCAGTGTGGT
GCCCCCACCCCTGTAACCAAGGCGTGGGTGTATGGCTGTGCCCGCTGTTCCCACACCCACACCGAGCCTGTGGCAGAGAC
CTGGGCAGATCCGGCTCAGTGCGCCTTTTGTAACCCCTAA

Upstream 100 bases:

>100_bases
GGCTTGCCGCTAGAACCCAGCCCCCTGGTTTGAGCCCTCCGATGAGCCCAACAAGAAAGCTGCAGACTTCGTTTGCCGGA
TCGGGGTCAGTTCTGGATCT

Downstream 100 bases:

>100_bases
CTTGTCTTGAGAAGGATCCCGGCGCCAGCTCCAACTCGATGTATTTCGGTGCAAGGGCAAGGCTTGGGAGACTTGCCATA
AAAAAGGGATCCACTGCAGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MHWKGRVAYLATLHRKEQVIGPLLAHHLGIQVQVIPLDTDQLGTFSRERPRPGDPIHTLRLKIERARQAHPASLVLASEG
SFGPHPQIPWIPLNQEWVMLKVFEPGADPLELVGYAESTQTNFSHRWVQSWAEALDFAQKVGFPQHGLIALDQPENPQVI
HKGIQDEATLKQVVEELLARQGGLHLETDMRALYNPTRLQVIAAATQNLIAKAQSLCPACGIPGYWRIRSVSGLPCGQCG
APTPVTKAWVYGCARCSHTHTEPVAETWADPAQCAFCNP

Sequences:

>Translated_279_residues
MHWKGRVAYLATLHRKEQVIGPLLAHHLGIQVQVIPLDTDQLGTFSRERPRPGDPIHTLRLKIERARQAHPASLVLASEG
SFGPHPQIPWIPLNQEWVMLKVFEPGADPLELVGYAESTQTNFSHRWVQSWAEALDFAQKVGFPQHGLIALDQPENPQVI
HKGIQDEATLKQVVEELLARQGGLHLETDMRALYNPTRLQVIAAATQNLIAKAQSLCPACGIPGYWRIRSVSGLPCGQCG
APTPVTKAWVYGCARCSHTHTEPVAETWADPAQCAFCNP
>Mature_279_residues
MHWKGRVAYLATLHRKEQVIGPLLAHHLGIQVQVIPLDTDQLGTFSRERPRPGDPIHTLRLKIERARQAHPASLVLASEG
SFGPHPQIPWIPLNQEWVMLKVFEPGADPLELVGYAESTQTNFSHRWVQSWAEALDFAQKVGFPQHGLIALDQPENPQVI
HKGIQDEATLKQVVEELLARQGGLHLETDMRALYNPTRLQVIAAATQNLIAKAQSLCPACGIPGYWRIRSVSGLPCGQCG
APTPVTKAWVYGCARCSHTHTEPVAETWADPAQCAFCNP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30874; Mature: 30874

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHWKGRVAYLATLHRKEQVIGPLLAHHLGIQVQVIPLDTDQLGTFSRERPRPGDPIHTLR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHCCCCCCCCCCCCCHHHHH
LKIERARQAHPASLVLASEGSFGPHPQIPWIPLNQEWVMLKVFEPGADPLELVGYAESTQ
HHHHHHHCCCCCEEEEECCCCCCCCCCCCEEECCCCEEEEEEECCCCCHHHHEECCCCCC
TNFSHRWVQSWAEALDFAQKVGFPQHGLIALDQPENPQVIHKGIQDEATLKQVVEELLAR
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHH
QGGLHLETDMRALYNPTRLQVIAAATQNLIAKAQSLCPACGIPGYWRIRSVSGLPCGQCG
CCCCEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC
APTPVTKAWVYGCARCSHTHTEPVAETWADPAQCAFCNP
CCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MHWKGRVAYLATLHRKEQVIGPLLAHHLGIQVQVIPLDTDQLGTFSRERPRPGDPIHTLR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHCCCCCCCCCCCCCHHHHH
LKIERARQAHPASLVLASEGSFGPHPQIPWIPLNQEWVMLKVFEPGADPLELVGYAESTQ
HHHHHHHCCCCCEEEEECCCCCCCCCCCCEEECCCCEEEEEEECCCCCHHHHEECCCCCC
TNFSHRWVQSWAEALDFAQKVGFPQHGLIALDQPENPQVIHKGIQDEATLKQVVEELLAR
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHH
QGGLHLETDMRALYNPTRLQVIAAATQNLIAKAQSLCPACGIPGYWRIRSVSGLPCGQCG
CCCCEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC
APTPVTKAWVYGCARCSHTHTEPVAETWADPAQCAFCNP
CCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA