| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606082
Identifier: 86606082
GI number: 86606082
Start: 1420078
End: 1420917
Strand: Reverse
Name: 86606082
Synonym: CYA_1413
Alternate gene names: NA
Gene position: 1420917-1420078 (Counterclockwise)
Preceding gene: 86606083
Following gene: 86606075
Centisome position: 48.45
GC content: 60.83
Gene sequence:
>840_bases ATGCACTGGAAAGGTCGGGTTGCCTACTTGGCAACCCTGCATCGCAAAGAGCAGGTGATCGGCCCTCTCTTGGCCCACCA CCTGGGGATCCAGGTGCAAGTGATACCTCTGGACACCGACCAACTGGGCACCTTCTCGCGGGAGCGGCCTCGGCCAGGGG ATCCCATCCACACCCTACGCCTGAAAATTGAGAGAGCCCGCCAAGCTCATCCCGCCTCTTTGGTTTTGGCCAGCGAGGGA TCCTTTGGCCCCCACCCTCAGATCCCTTGGATTCCTTTGAACCAGGAATGGGTCATGCTCAAGGTTTTTGAACCGGGCGC GGATCCCTTGGAGCTGGTGGGCTACGCAGAAAGCACCCAAACCAACTTCAGCCATCGCTGGGTGCAGAGCTGGGCAGAAG CGCTCGACTTTGCCCAAAAAGTAGGTTTCCCGCAGCACGGTCTAATCGCCCTCGATCAACCGGAAAACCCCCAAGTTATC CACAAAGGGATCCAAGACGAAGCTACCCTGAAGCAGGTGGTAGAAGAGCTGCTGGCCCGCCAGGGAGGGCTGCACCTGGA AACCGATATGCGGGCCCTGTACAACCCAACCCGCCTACAGGTGATCGCGGCAGCCACCCAAAACCTCATCGCCAAAGCCC AAAGCCTCTGCCCGGCCTGCGGGATCCCTGGCTACTGGCGCATCCGTTCGGTCTCTGGGCTGCCCTGCGGCCAGTGTGGT GCCCCCACCCCTGTAACCAAGGCGTGGGTGTATGGCTGTGCCCGCTGTTCCCACACCCACACCGAGCCTGTGGCAGAGAC CTGGGCAGATCCGGCTCAGTGCGCCTTTTGTAACCCCTAA
Upstream 100 bases:
>100_bases GGCTTGCCGCTAGAACCCAGCCCCCTGGTTTGAGCCCTCCGATGAGCCCAACAAGAAAGCTGCAGACTTCGTTTGCCGGA TCGGGGTCAGTTCTGGATCT
Downstream 100 bases:
>100_bases CTTGTCTTGAGAAGGATCCCGGCGCCAGCTCCAACTCGATGTATTTCGGTGCAAGGGCAAGGCTTGGGAGACTTGCCATA AAAAAGGGATCCACTGCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MHWKGRVAYLATLHRKEQVIGPLLAHHLGIQVQVIPLDTDQLGTFSRERPRPGDPIHTLRLKIERARQAHPASLVLASEG SFGPHPQIPWIPLNQEWVMLKVFEPGADPLELVGYAESTQTNFSHRWVQSWAEALDFAQKVGFPQHGLIALDQPENPQVI HKGIQDEATLKQVVEELLARQGGLHLETDMRALYNPTRLQVIAAATQNLIAKAQSLCPACGIPGYWRIRSVSGLPCGQCG APTPVTKAWVYGCARCSHTHTEPVAETWADPAQCAFCNP
Sequences:
>Translated_279_residues MHWKGRVAYLATLHRKEQVIGPLLAHHLGIQVQVIPLDTDQLGTFSRERPRPGDPIHTLRLKIERARQAHPASLVLASEG SFGPHPQIPWIPLNQEWVMLKVFEPGADPLELVGYAESTQTNFSHRWVQSWAEALDFAQKVGFPQHGLIALDQPENPQVI HKGIQDEATLKQVVEELLARQGGLHLETDMRALYNPTRLQVIAAATQNLIAKAQSLCPACGIPGYWRIRSVSGLPCGQCG APTPVTKAWVYGCARCSHTHTEPVAETWADPAQCAFCNP >Mature_279_residues MHWKGRVAYLATLHRKEQVIGPLLAHHLGIQVQVIPLDTDQLGTFSRERPRPGDPIHTLRLKIERARQAHPASLVLASEG SFGPHPQIPWIPLNQEWVMLKVFEPGADPLELVGYAESTQTNFSHRWVQSWAEALDFAQKVGFPQHGLIALDQPENPQVI HKGIQDEATLKQVVEELLARQGGLHLETDMRALYNPTRLQVIAAATQNLIAKAQSLCPACGIPGYWRIRSVSGLPCGQCG APTPVTKAWVYGCARCSHTHTEPVAETWADPAQCAFCNP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30874; Mature: 30874
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHWKGRVAYLATLHRKEQVIGPLLAHHLGIQVQVIPLDTDQLGTFSRERPRPGDPIHTLR CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHCCCCCCCCCCCCCHHHHH LKIERARQAHPASLVLASEGSFGPHPQIPWIPLNQEWVMLKVFEPGADPLELVGYAESTQ HHHHHHHCCCCCEEEEECCCCCCCCCCCCEEECCCCEEEEEEECCCCCHHHHEECCCCCC TNFSHRWVQSWAEALDFAQKVGFPQHGLIALDQPENPQVIHKGIQDEATLKQVVEELLAR CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHH QGGLHLETDMRALYNPTRLQVIAAATQNLIAKAQSLCPACGIPGYWRIRSVSGLPCGQCG CCCCEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC APTPVTKAWVYGCARCSHTHTEPVAETWADPAQCAFCNP CCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCC >Mature Secondary Structure MHWKGRVAYLATLHRKEQVIGPLLAHHLGIQVQVIPLDTDQLGTFSRERPRPGDPIHTLR CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHCCCCCCCCCCCCCHHHHH LKIERARQAHPASLVLASEGSFGPHPQIPWIPLNQEWVMLKVFEPGADPLELVGYAESTQ HHHHHHHCCCCCEEEEECCCCCCCCCCCCEEECCCCEEEEEEECCCCCHHHHEECCCCCC TNFSHRWVQSWAEALDFAQKVGFPQHGLIALDQPENPQVIHKGIQDEATLKQVVEELLAR CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHH QGGLHLETDMRALYNPTRLQVIAAATQNLIAKAQSLCPACGIPGYWRIRSVSGLPCGQCG CCCCEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCC APTPVTKAWVYGCARCSHTHTEPVAETWADPAQCAFCNP CCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA