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The map label for this gene is yddE [C]

Identifier: 86606075

GI number: 86606075

Start: 1410528

End: 1411340

Strand: Reverse

Name: yddE [C]

Synonym: CYA_1405

Alternate gene names: 86606075

Gene position: 1411340-1410528 (Counterclockwise)

Preceding gene: 86606082

Following gene: 86606072

Centisome position: 48.12

GC content: 63.1

Gene sequence:

>813_bases
GTGCGGATCCCGTTGTTTCAAGTGGATGCGTTTACGGCAGTGCCTTTTAAGGGCAATCCGGCAGCGGTGTGTTTGCTGCC
TCAGGAGCTGCCGGCAGCTTTGATGCGAGCAATTGCGGCGGAGAACAATCTGTCGGAAACGGCTTTTTTGCTGCCCCAGG
GATCCGAAGGCGAGGTTCCCCACTATGGGCTGCGCTGGTTTACTCCCACCACGGAGGTAGAACTCTGTGGCCATGCCACG
TTGGGCAGCGCCTATGTGCTCTTGACCGAGATTCACCCGGAAGCTCAGGGGGTGGCCTTTTCCACCCGCAGTGGCCGGCT
GCAGGTGCGGCGGCAGGGGGAGCGGCTGGCGATGGATTTTCCCGCCCAGTTCCCGCAACCCTGGCCGGAAGGCCAAGAGC
AGGTGGCTGCGGCATTGGGGATCCCTCCTCTGGAGTTGTACCGCGGCAGCATGGGGGTAGCGGTGCTGACTTCGGCCCAG
CAGGTGCAGCAGCTGCAGCCGGATTGGGAGCGGGTTCAGGCACTGCCTGTTTCTGGGTTGATCGTCACTGCCTCGGGAGG
GGATCTAGAAGACCAGCCAGATTTTGTCTGTCGTGTTTTTGCCCCCCAGTTGGGGATCCCGGAGGATCCGGTGACCGGGT
CTGCCCAGTGCCTGTTGACACCCTATTGGTCGCAGCGCCTGGGCCGGACTGAGCTCAAAGCCCGCCAGCTCTCGGCGCGG
GGAGGCGAGCTGTGGTGTCGCGATCTCGGCACTCGGGTGGAGATTGCCGGGCAGGCGGTGCTGGTGATAGCGGGAGAGCT
GAGGATTCCCTAA

Upstream 100 bases:

>100_bases
TTTGGCGGGATCTCCCTTTTTGTCGGGTACGGTTGGGTGCGGATCCCCCTACTTCTGGGCCTGTTGTGGGATCATGGCCT
GAGGTAGGTTGGGCAAGCAG

Downstream 100 bases:

>100_bases
AAAAACACCCCGGCTGGCTCCGAGGTGCTGGGAAGACTCTCGCGAAGAATAAGTGCGCAAGCTAGCCCAAAAGTTCTGCC
GCCTGGATGAGCTCCACTTG

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRIPLFQVDAFTAVPFKGNPAAVCLLPQELPAALMRAIAAENNLSETAFLLPQGSEGEVPHYGLRWFTPTTEVELCGHAT
LGSAYVLLTEIHPEAQGVAFSTRSGRLQVRRQGERLAMDFPAQFPQPWPEGQEQVAAALGIPPLELYRGSMGVAVLTSAQ
QVQQLQPDWERVQALPVSGLIVTASGGDLEDQPDFVCRVFAPQLGIPEDPVTGSAQCLLTPYWSQRLGRTELKARQLSAR
GGELWCRDLGTRVEIAGQAVLVIAGELRIP

Sequences:

>Translated_270_residues
MRIPLFQVDAFTAVPFKGNPAAVCLLPQELPAALMRAIAAENNLSETAFLLPQGSEGEVPHYGLRWFTPTTEVELCGHAT
LGSAYVLLTEIHPEAQGVAFSTRSGRLQVRRQGERLAMDFPAQFPQPWPEGQEQVAAALGIPPLELYRGSMGVAVLTSAQ
QVQQLQPDWERVQALPVSGLIVTASGGDLEDQPDFVCRVFAPQLGIPEDPVTGSAQCLLTPYWSQRLGRTELKARQLSAR
GGELWCRDLGTRVEIAGQAVLVIAGELRIP
>Mature_270_residues
MRIPLFQVDAFTAVPFKGNPAAVCLLPQELPAALMRAIAAENNLSETAFLLPQGSEGEVPHYGLRWFTPTTEVELCGHAT
LGSAYVLLTEIHPEAQGVAFSTRSGRLQVRRQGERLAMDFPAQFPQPWPEGQEQVAAALGIPPLELYRGSMGVAVLTSAQ
QVQQLQPDWERVQALPVSGLIVTASGGDLEDQPDFVCRVFAPQLGIPEDPVTGSAQCLLTPYWSQRLGRTELKARQLSAR
GGELWCRDLGTRVEIAGQAVLVIAGELRIP

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=293, Percent_Identity=40.2730375426621, Blast_Score=185, Evalue=5e-47,
Organism=Homo sapiens, GI74316009, Length=253, Percent_Identity=39.9209486166008, Blast_Score=168, Evalue=4e-42,
Organism=Escherichia coli, GI1787737, Length=235, Percent_Identity=31.063829787234, Blast_Score=79, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17542160, Length=310, Percent_Identity=36.1290322580645, Blast_Score=161, Evalue=4e-40,
Organism=Caenorhabditis elegans, GI17542154, Length=310, Percent_Identity=36.1290322580645, Blast_Score=161, Evalue=4e-40,
Organism=Caenorhabditis elegans, GI17542158, Length=313, Percent_Identity=34.185303514377, Blast_Score=147, Evalue=6e-36,
Organism=Caenorhabditis elegans, GI17542152, Length=313, Percent_Identity=34.185303514377, Blast_Score=147, Evalue=6e-36,
Organism=Saccharomyces cerevisiae, GI6321818, Length=296, Percent_Identity=27.3648648648649, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29288; Mature: 29288

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIPLFQVDAFTAVPFKGNPAAVCLLPQELPAALMRAIAAENNLSETAFLLPQGSEGEVP
CCCCEEEECCEEECCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
HYGLRWFTPTTEVELCGHATLGSAYVLLTEIHPEAQGVAFSTRSGRLQVRRQGERLAMDF
CCCEEEECCCCCEEECCCCCCCCEEEEEEEECCCCCCEEEECCCCCEEEEECCCEEEEEC
PAQFPQPWPEGQEQVAAALGIPPLELYRGSMGVAVLTSAQQVQQLQPDWERVQALPVSGL
CCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCEEEECCHHHHHHCCCCHHHHHCCCCCCE
IVTASGGDLEDQPDFVCRVFAPQLGIPEDPVTGSAQCLLTPYWSQRLGRTELKARQLSAR
EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECHHHHHCCHHHHHHHHHHCC
GGELWCRDLGTRVEIAGQAVLVIAGELRIP
CCCEEEHHCCCEEEECCCEEEEEEEEECCC
>Mature Secondary Structure
MRIPLFQVDAFTAVPFKGNPAAVCLLPQELPAALMRAIAAENNLSETAFLLPQGSEGEVP
CCCCEEEECCEEECCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
HYGLRWFTPTTEVELCGHATLGSAYVLLTEIHPEAQGVAFSTRSGRLQVRRQGERLAMDF
CCCEEEECCCCCEEECCCCCCCCEEEEEEEECCCCCCEEEECCCCCEEEEECCCEEEEEC
PAQFPQPWPEGQEQVAAALGIPPLELYRGSMGVAVLTSAQQVQQLQPDWERVQALPVSGL
CCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCEEEECCHHHHHHCCCCHHHHHCCCCCCE
IVTASGGDLEDQPDFVCRVFAPQLGIPEDPVTGSAQCLLTPYWSQRLGRTELKARQLSAR
EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECHHHHHCCHHHHHHHHHHCC
GGELWCRDLGTRVEIAGQAVLVIAGELRIP
CCCEEEHHCCCEEEECCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]