| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86606057
Identifier: 86606057
GI number: 86606057
Start: 1393034
End: 1394890
Strand: Reverse
Name: 86606057
Synonym: CYA_1387
Alternate gene names: NA
Gene position: 1394890-1393034 (Counterclockwise)
Preceding gene: 86606058
Following gene: 86606056
Centisome position: 47.56
GC content: 62.36
Gene sequence:
>1857_bases TTGCAGAATGCTACTTCTCTAAGGATTTTCCACTACGATAGTTGTAGCAGAGCTTACTCTTCCCGTCCGAGAGGCCCAAT GAATCCGCCGACCAGCCCCACCCCAACCGCCATCGAGCAGGAAAAGTTTGAGATCCGCTTGGGAGAAGCCCTCAACCGAG CAGGACTGCTCACCCCCGCCCAACTGGCTCAGGCCATGTGGGAAAAGGCCGACAACCCCTTGATGTTGGGGGAGCTGTGT ATGCAGCACGGCTGGGTTGCCCCCCGAGATCTCTACCCATTGATTCCGGTCGAATTGGTGCGCATCGGCGAGATCTTGGT GCTGCATGGGTATCTGGAGCTGGAGCACATCCATCAGGCCCTGATTCAGCAGCGGCAGCACCCGGAGCGCAAGCTGGGGG AGATCTTGGTGCAGCAGGGCTGGGTGCAGCCCCACTGGTTGGAGTGGGCCCTCGACAAGCAGCAGCAGCTCCGGCGACGG CGAGGAGCTGCCAACAGTTGGGAAGTGATGCTGGAGCAGTGGTCCACCATTCCGGATCAGCCCCCCCTCTACGCTTCGCC GCTGCAGGTGGCGCAGCAAGTTCACAAAGCTACCGCGCAATACCAAGCCCGACTGGAGCACTACCAAGAGCAGGTTGCCG CCCTAGAAGCGCAACTGGAGCGGGAGCGACAGCAGCTCGTTGAGTCTCAATCCCGCCAGCAGCAGCAGCAACAGCGCATT GCCGAGTTGGAAGCCCAACTGGCGGCTCAAATCCAGCAGGGATCCGAGCAACACAGGGCTGCCCAGCAGCGCATTCAGGA GTTGGAGGAGCAGCTCCGAGCGCAGCAAGATCGGGGATCCGCGCAAGTCCAGGCACTGGCCGAGCAGTTGCAAGCTGCCC AGGCCGAGCTGGAGACCCTGCGGCGCCACTGCCACGAGCTGACGGAATGGCAATCTCAGGCCAAGCTCAAGCTGCAAGAG TTGGGATCCCGGCTGCAGCAGCATCAGCAAGCTGAGGCTCAACTGCGCCAGGCTCTTGAGCACAAGGAAGCCGAATTGGC CGCTCTCAGCCAATCGCTGCAGGAGCAGCAGCACCAGCTTCAAGTGGCCCAATCGACGAAGGCCCGCCTCATTGCCGACC TGGCCCACGCCCGCCAAGAAGCCAGCCAGACCATCCACCGGCTGCGGGGGGAACTTCAGGAAGCCCAGACCCAACTCCAG GTAACTCAAGAACGCCTGCAGGAAGTCCAAGCCCAACTGCAAGCCACCCAAAGCCATCTGCAGTCCACCGAAGCCCAGCT TCAACAGGCCCGAGAGCAGGTGCGCCAGCTCCAGGCCCAAGTGCAGGCCAACCGGACGCCGTCGCCTGCCCCGGCTACCC AAACTGCGAGCGTGGCCGAATCGACCGCAGATGCCGAGCTGCCGCCTCAGGAGTATTTGGGAGAAGAAGATCTGGAAGCG CTGCAGCGGGCCAACCCTTGGGTGCGGCGGATCTTGACCCAGTTGCGCGCAGCCGGTCTCCTCGACAACGCCGGCATCGA AACCGTCCTCCACGCCTGGGAAACAGAGGGCGGCACTTTCACAGACGTGCTGACCCACCACAGCGGCCTCAAGCCGGAGA CAGTCAAGTTTTTCAGCGAAGACGGCTACTCTGTCTACCTGGCAGGCGGACGGCACGTGGCCGACTACCTTAAGGCTTCG GGGCTGGTCAGCGCCGCGCAAATCCAGCAGATCCAAGAGCACCTACCCCCTGGGGGATCCCTCTGCCAGGCGCTTGTCGA AGCCGGGATCCTGTCGCAAGCCACCGCCCTCTATTTTGAGCGCCACTTCGGTGGCAAAAAGCCCCGTCGCTCCCTGCGGC AAGAGCTGATGTTGTGA
Upstream 100 bases:
>100_bases AACAGTTTGCCCAAAGCCAAGAACAGCGCCCCTCTTAGGACTTAAAAAGCGACCTTCCGGCAAAATCCGTGGATCCTCGG CTTGACAAAATGCGTTTCGG
Downstream 100 bases:
>100_bases GAGCGGATCGGGGATCCGCACCTCTTTCCCATCTCTTGCACCGGCAAGGGATCCAAAGGCAAATACGGGCTGCCGGCAGA CCCCATGCGTCCACTGGAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 618; Mature: 618
Protein sequence:
>618_residues MQNATSLRIFHYDSCSRAYSSRPRGPMNPPTSPTPTAIEQEKFEIRLGEALNRAGLLTPAQLAQAMWEKADNPLMLGELC MQHGWVAPRDLYPLIPVELVRIGEILVLHGYLELEHIHQALIQQRQHPERKLGEILVQQGWVQPHWLEWALDKQQQLRRR RGAANSWEVMLEQWSTIPDQPPLYASPLQVAQQVHKATAQYQARLEHYQEQVAALEAQLERERQQLVESQSRQQQQQQRI AELEAQLAAQIQQGSEQHRAAQQRIQELEEQLRAQQDRGSAQVQALAEQLQAAQAELETLRRHCHELTEWQSQAKLKLQE LGSRLQQHQQAEAQLRQALEHKEAELAALSQSLQEQQHQLQVAQSTKARLIADLAHARQEASQTIHRLRGELQEAQTQLQ VTQERLQEVQAQLQATQSHLQSTEAQLQQAREQVRQLQAQVQANRTPSPAPATQTASVAESTADAELPPQEYLGEEDLEA LQRANPWVRRILTQLRAAGLLDNAGIETVLHAWETEGGTFTDVLTHHSGLKPETVKFFSEDGYSVYLAGGRHVADYLKAS GLVSAAQIQQIQEHLPPGGSLCQALVEAGILSQATALYFERHFGGKKPRRSLRQELML
Sequences:
>Translated_618_residues MQNATSLRIFHYDSCSRAYSSRPRGPMNPPTSPTPTAIEQEKFEIRLGEALNRAGLLTPAQLAQAMWEKADNPLMLGELC MQHGWVAPRDLYPLIPVELVRIGEILVLHGYLELEHIHQALIQQRQHPERKLGEILVQQGWVQPHWLEWALDKQQQLRRR RGAANSWEVMLEQWSTIPDQPPLYASPLQVAQQVHKATAQYQARLEHYQEQVAALEAQLERERQQLVESQSRQQQQQQRI AELEAQLAAQIQQGSEQHRAAQQRIQELEEQLRAQQDRGSAQVQALAEQLQAAQAELETLRRHCHELTEWQSQAKLKLQE LGSRLQQHQQAEAQLRQALEHKEAELAALSQSLQEQQHQLQVAQSTKARLIADLAHARQEASQTIHRLRGELQEAQTQLQ VTQERLQEVQAQLQATQSHLQSTEAQLQQAREQVRQLQAQVQANRTPSPAPATQTASVAESTADAELPPQEYLGEEDLEA LQRANPWVRRILTQLRAAGLLDNAGIETVLHAWETEGGTFTDVLTHHSGLKPETVKFFSEDGYSVYLAGGRHVADYLKAS GLVSAAQIQQIQEHLPPGGSLCQALVEAGILSQATALYFERHFGGKKPRRSLRQELML >Mature_618_residues MQNATSLRIFHYDSCSRAYSSRPRGPMNPPTSPTPTAIEQEKFEIRLGEALNRAGLLTPAQLAQAMWEKADNPLMLGELC MQHGWVAPRDLYPLIPVELVRIGEILVLHGYLELEHIHQALIQQRQHPERKLGEILVQQGWVQPHWLEWALDKQQQLRRR RGAANSWEVMLEQWSTIPDQPPLYASPLQVAQQVHKATAQYQARLEHYQEQVAALEAQLERERQQLVESQSRQQQQQQRI AELEAQLAAQIQQGSEQHRAAQQRIQELEEQLRAQQDRGSAQVQALAEQLQAAQAELETLRRHCHELTEWQSQAKLKLQE LGSRLQQHQQAEAQLRQALEHKEAELAALSQSLQEQQHQLQVAQSTKARLIADLAHARQEASQTIHRLRGELQEAQTQLQ VTQERLQEVQAQLQATQSHLQSTEAQLQQAREQVRQLQAQVQANRTPSPAPATQTASVAESTADAELPPQEYLGEEDLEA LQRANPWVRRILTQLRAAGLLDNAGIETVLHAWETEGGTFTDVLTHHSGLKPETVKFFSEDGYSVYLAGGRHVADYLKAS GLVSAAQIQQIQEHLPPGGSLCQALVEAGILSQATALYFERHFGGKKPRRSLRQELML
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69960; Mature: 69960
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNATSLRIFHYDSCSRAYSSRPRGPMNPPTSPTPTAIEQEKFEIRLGEALNRAGLLTPA CCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH QLAQAMWEKADNPLMLGELCMQHGWVAPRDLYPLIPVELVRIGEILVLHGYLELEHIHQA HHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LIQQRQHPERKLGEILVQQGWVQPHWLEWALDKQQQLRRRRGAANSWEVMLEQWSTIPDQ HHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC PPLYASPLQVAQQVHKATAQYQARLEHYQEQVAALEAQLERERQQLVESQSRQQQQQQRI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AELEAQLAAQIQQGSEQHRAAQQRIQELEEQLRAQQDRGSAQVQALAEQLQAAQAELETL HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH RRHCHELTEWQSQAKLKLQELGSRLQQHQQAEAQLRQALEHKEAELAALSQSLQEQQHQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVAQSTKARLIADLAHARQEASQTIHRLRGELQEAQTQLQVTQERLQEVQAQLQATQSHL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSTEAQLQQAREQVRQLQAQVQANRTPSPAPATQTASVAESTADAELPPQEYLGEEDLEA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCHHHCCCHHHHHH LQRANPWVRRILTQLRAAGLLDNAGIETVLHAWETEGGTFTDVLTHHSGLKPETVKFFSE HHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHCC DGYSVYLAGGRHVADYLKASGLVSAAQIQQIQEHLPPGGSLCQALVEAGILSQATALYFE CCCEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH RHFGGKKPRRSLRQELML HHCCCCCHHHHHHHHHCC >Mature Secondary Structure MQNATSLRIFHYDSCSRAYSSRPRGPMNPPTSPTPTAIEQEKFEIRLGEALNRAGLLTPA CCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH QLAQAMWEKADNPLMLGELCMQHGWVAPRDLYPLIPVELVRIGEILVLHGYLELEHIHQA HHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LIQQRQHPERKLGEILVQQGWVQPHWLEWALDKQQQLRRRRGAANSWEVMLEQWSTIPDQ HHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC PPLYASPLQVAQQVHKATAQYQARLEHYQEQVAALEAQLERERQQLVESQSRQQQQQQRI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AELEAQLAAQIQQGSEQHRAAQQRIQELEEQLRAQQDRGSAQVQALAEQLQAAQAELETL HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH RRHCHELTEWQSQAKLKLQELGSRLQQHQQAEAQLRQALEHKEAELAALSQSLQEQQHQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVAQSTKARLIADLAHARQEASQTIHRLRGELQEAQTQLQVTQERLQEVQAQLQATQSHL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSTEAQLQQAREQVRQLQAQVQANRTPSPAPATQTASVAESTADAELPPQEYLGEEDLEA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCHHHCCCHHHHHH LQRANPWVRRILTQLRAAGLLDNAGIETVLHAWETEGGTFTDVLTHHSGLKPETVKFFSE HHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHCC DGYSVYLAGGRHVADYLKASGLVSAAQIQQIQEHLPPGGSLCQALVEAGILSQATALYFE CCCEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH RHFGGKKPRRSLRQELML HHCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA