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The map label for this gene is apcB-1

Identifier: 86606013

GI number: 86606013

Start: 1350319

End: 1350822

Strand: Reverse

Name: apcB-1

Synonym: CYA_1337

Alternate gene names: 86606013

Gene position: 1350822-1350319 (Counterclockwise)

Preceding gene: 86606014

Following gene: 86606010

Centisome position: 46.06

GC content: 59.52

Gene sequence:

>504_bases
ATGCGGGATGCCGTAACCACACTGATCAAAACCTATGACCTGGCCGGCCGCTACTTGGATCGGAATGCCATGGACGCGCT
CAAGGCCTTTTACGATTCGGGTCTGCGGCGCATCCAGGCCGTGCAGGTGATTAACCTCAACTCGGTGGACATTGTCAAGA
CGGCTGCTGCGGCCATGTTTGCCCAGGTGCCGGATCTAATCCGTCCGGGCGGCAACGCCTATACCACCCGCCGCTACGCC
ACCTGTTTGCGGGATATGGACTACTTCCTGCGCTACGCTTCCTACGCCCTGGTGGCCGCTGATACCAGCATCTTGGACGA
GCGCGTCCTGGCTGGTCTGCGGGAAACCTACAACTCCCTGGGGGTGCCGATTGCCCCGACAGTGATCGGGATCCAGAACA
TGAAGCAGCGCACCCTGGAGCTGCTCGGCTCCGACGAGGATTACAGCTTTGTGGCCGAGCCCTTCGATTACATGAGCGCT
AAACTCAGCGAAACCGACATCTAA

Upstream 100 bases:

>100_bases
GGCTCTGGCTCGATTTTCCAAGGTTGGCCTTTGGACGTTGCCGGCAAAATTCTCATCTCAAGCTACTTTTACATAGAGTT
ACAGGAAGGGAGTTGGGGAT

Downstream 100 bases:

>100_bases
CCTACTCGTCGGCGTAGGGATTGGCCGGCACCGGTATTGGCTCCACCTGATCGGCCAGGATCACCAACTGAGGCTGGCCA
TCCCGTTGCTCCACGGCCAT

Product: allophycocyanin, beta subunit

Products: NA

Alternate protein names: Allophycocyanin subunit B18 [H]

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MRDAVTTLIKTYDLAGRYLDRNAMDALKAFYDSGLRRIQAVQVINLNSVDIVKTAAAAMFAQVPDLIRPGGNAYTTRRYA
TCLRDMDYFLRYASYALVAADTSILDERVLAGLRETYNSLGVPIAPTVIGIQNMKQRTLELLGSDEDYSFVAEPFDYMSA
KLSETDI

Sequences:

>Translated_167_residues
MRDAVTTLIKTYDLAGRYLDRNAMDALKAFYDSGLRRIQAVQVINLNSVDIVKTAAAAMFAQVPDLIRPGGNAYTTRRYA
TCLRDMDYFLRYASYALVAADTSILDERVLAGLRETYNSLGVPIAPTVIGIQNMKQRTLELLGSDEDYSFVAEPFDYMSA
KLSETDI
>Mature_167_residues
MRDAVTTLIKTYDLAGRYLDRNAMDALKAFYDSGLRRIQAVQVINLNSVDIVKTAAAAMFAQVPDLIRPGGNAYTTRRYA
TCLRDMDYFLRYASYALVAADTSILDERVLAGLRETYNSLGVPIAPTVIGIQNMKQRTLELLGSDEDYSFVAEPFDYMSA
KLSETDI

Specific function: A variant beta-allophycocyanin (AP) which forms a complex with ApcE, a phycobilisome terminal emmiter that influences energy transfer to photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006245
- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 18627; Mature: 18627

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDAVTTLIKTYDLAGRYLDRNAMDALKAFYDSGLRRIQAVQVINLNSVDIVKTAAAAMF
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHH
AQVPDLIRPGGNAYTTRRYATCLRDMDYFLRYASYALVAADTSILDERVLAGLRETYNSL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GVPIAPTVIGIQNMKQRTLELLGSDEDYSFVAEPFDYMSAKLSETDI
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHCCCC
>Mature Secondary Structure
MRDAVTTLIKTYDLAGRYLDRNAMDALKAFYDSGLRRIQAVQVINLNSVDIVKTAAAAMF
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHH
AQVPDLIRPGGNAYTTRRYATCLRDMDYFLRYASYALVAADTSILDERVLAGLRETYNSL
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GVPIAPTVIGIQNMKQRTLELLGSDEDYSFVAEPFDYMSAKLSETDI
CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]