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The map label for this gene is yhdX [H]

Identifier: 86605965

GI number: 86605965

Start: 1293307

End: 1294479

Strand: Reverse

Name: yhdX [H]

Synonym: CYA_1283

Alternate gene names: 86605965

Gene position: 1294479-1293307 (Counterclockwise)

Preceding gene: 86605966

Following gene: 86605964

Centisome position: 44.14

GC content: 61.81

Gene sequence:

>1173_bases
ATGACTTCTCTGTCCGACCAGTCCCACCTTCGCCCCCCCTGGTGGCGGAATGAGCGCATCCTAAAAGTTCTGCTGCAGGT
GGCCTTTGTCGTGGCCGTGCTGCTGGTGTTCGGGATCCTCGCCCAAAATCTCCTCGCCAGCCTGCGCCGCCTGGGCATCA
GTTTGGGCTTTCGCTTTCTGGACAACTCCGCCAACTTTGGGATCACCGAGGGGCTGATCCCCTACGACCCCTCCGAGAGC
TACCTGAAGGCTCTGGCGGTGGGAGCGGTGAACACCCTCTGGCTGTCGGCAGTCAGCATTGTGTTGGCGACGGCGATGGG
CTTTGTCCTGGGGATGGCTCGCCTCTCCAGCAACTGGCTGGCCCGCCAGCTGGCCACCGTTGTTACCGAGATCTTTCGCA
ATGTCCCGGTGCTGCTGATCGTGATCTTCTGGTACCAGGGGGTGATCCTCACCCTGCCGGGGGTGCGCAACAGTCTCTCC
ATCGGTGGGCTTGTCTTTATCAACCAGCGGGGAGTGAAGCTGCCCGGGTTGGATCCCAGCGGCTGGCTGGTTCCCGCGCT
GGCCATTGTAATCGCGGCTGGGTGGGGGATCCGCAAGCTGCTCCTAGTCTGCCGACCCGAGCTGGGATCCCGGCAGCGGA
ACCTGTGGGTGGCTGCGGGGGTGGTGCTGCTGGCGGTGGCCTGCTGGGTGCTCTTCCCAGAGCCGCCGGTGCGGCTGGAT
GTCCCGGTACTGGAGCGCTTTAACTTCCGGGGTGGGATCCAGCTTTCGGCGGAGTTTACCGCCATGATGCTGGGCTTGGT
GACCTACACCGGCTGCTACATTGCCGAAGTGGTGCGGGGATCCTTTTTGGCGGTGCCGCGGGGGCAGTGGGAGGCGGCCC
GGGCCGTCGGCCTGTCGGAGCTGCAAACCTTTCGCTTGGTGATTGTGCCCCAGGCCCTGCGGATCATGATCCCCTCCTTG
AACACTCAGTATCTCACCTTGATTAAAAACTCCAGCTTGGCCATTGCCGTTGGCTTTTCCGATCTGTTCAACATCAGCAG
CACCATCATCAACCAGTCGGGACGTTCGGTGGAGATGTTCGCCATCCTCATGGCCACCTACCTGACCTTTAACCTGGTGG
TTTCCTACGGCATGAACTGGCTCAATGCCCGCGTCAAATTGGTGGAGCGCTAA

Upstream 100 bases:

>100_bases
CCGGGAGCCATCGCCCCCCCTGGGACAGGGATCCCGGTTGGTCAGTACCGGCCAGGGATCCCCTATTCTCTGCTGTGCTC
TGAATTTTTGCTTGCCCCGC

Downstream 100 bases:

>100_bases
CCCATGCCCAGCAGTCTCTCCTCTCCCCTTGTAGAAGAAAAGGTACTCCCCCCCAGGGAGAAACAAAGTCCTCTGGCTTG
GGTGCGCCGCAACCTGTTCG

Product: polar amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MTSLSDQSHLRPPWWRNERILKVLLQVAFVVAVLLVFGILAQNLLASLRRLGISLGFRFLDNSANFGITEGLIPYDPSES
YLKALAVGAVNTLWLSAVSIVLATAMGFVLGMARLSSNWLARQLATVVTEIFRNVPVLLIVIFWYQGVILTLPGVRNSLS
IGGLVFINQRGVKLPGLDPSGWLVPALAIVIAAGWGIRKLLLVCRPELGSRQRNLWVAAGVVLLAVACWVLFPEPPVRLD
VPVLERFNFRGGIQLSAEFTAMMLGLVTYTGCYIAEVVRGSFLAVPRGQWEAARAVGLSELQTFRLVIVPQALRIMIPSL
NTQYLTLIKNSSLAIAVGFSDLFNISSTIINQSGRSVEMFAILMATYLTFNLVVSYGMNWLNARVKLVER

Sequences:

>Translated_390_residues
MTSLSDQSHLRPPWWRNERILKVLLQVAFVVAVLLVFGILAQNLLASLRRLGISLGFRFLDNSANFGITEGLIPYDPSES
YLKALAVGAVNTLWLSAVSIVLATAMGFVLGMARLSSNWLARQLATVVTEIFRNVPVLLIVIFWYQGVILTLPGVRNSLS
IGGLVFINQRGVKLPGLDPSGWLVPALAIVIAAGWGIRKLLLVCRPELGSRQRNLWVAAGVVLLAVACWVLFPEPPVRLD
VPVLERFNFRGGIQLSAEFTAMMLGLVTYTGCYIAEVVRGSFLAVPRGQWEAARAVGLSELQTFRLVIVPQALRIMIPSL
NTQYLTLIKNSSLAIAVGFSDLFNISSTIINQSGRSVEMFAILMATYLTFNLVVSYGMNWLNARVKLVER
>Mature_389_residues
TSLSDQSHLRPPWWRNERILKVLLQVAFVVAVLLVFGILAQNLLASLRRLGISLGFRFLDNSANFGITEGLIPYDPSESY
LKALAVGAVNTLWLSAVSIVLATAMGFVLGMARLSSNWLARQLATVVTEIFRNVPVLLIVIFWYQGVILTLPGVRNSLSI
GGLVFINQRGVKLPGLDPSGWLVPALAIVIAAGWGIRKLLLVCRPELGSRQRNLWVAAGVVLLAVACWVLFPEPPVRLDV
PVLERFNFRGGIQLSAEFTAMMLGLVTYTGCYIAEVVRGSFLAVPRGQWEAARAVGLSELQTFRLVIVPQALRIMIPSLN
TQYLTLIKNSSLAIAVGFSDLFNISSTIINQSGRSVEMFAILMATYLTFNLVVSYGMNWLNARVKLVER

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=357, Percent_Identity=41.7366946778711, Blast_Score=265, Evalue=5e-72,
Organism=Escherichia coli, GI1787030, Length=130, Percent_Identity=37.6923076923077, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788226, Length=119, Percent_Identity=34.453781512605, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786873, Length=122, Percent_Identity=32.7868852459016, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87082239, Length=125, Percent_Identity=35.2, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1786874, Length=129, Percent_Identity=30.2325581395349, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787087, Length=212, Percent_Identity=26.4150943396226, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788645, Length=126, Percent_Identity=30.1587301587302, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 42884; Mature: 42752

Theoretical pI: Translated: 10.64; Mature: 10.64

Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLSDQSHLRPPWWRNERILKVLLQVAFVVAVLLVFGILAQNLLASLRRLGISLGFRFL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DNSANFGITEGLIPYDPSESYLKALAVGAVNTLWLSAVSIVLATAMGFVLGMARLSSNWL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARQLATVVTEIFRNVPVLLIVIFWYQGVILTLPGVRNSLSIGGLVFINQRGVKLPGLDPS
HHHHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCC
GWLVPALAIVIAAGWGIRKLLLVCRPELGSRQRNLWVAAGVVLLAVACWVLFPEPPVRLD
CHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
VPVLERFNFRGGIQLSAEFTAMMLGLVTYTGCYIAEVVRGSFLAVPRGQWEAARAVGLSE
CHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHCHHH
LQTFRLVIVPQALRIMIPSLNTQYLTLIKNSSLAIAVGFSDLFNISSTIINQSGRSVEMF
HHHHHEEEEHHHHHHHHCCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHCCCCCHHHHH
AILMATYLTFNLVVSYGMNWLNARVKLVER
HHHHHHHHHHHHHHHHCCHHHHHHHHEECC
>Mature Secondary Structure 
TSLSDQSHLRPPWWRNERILKVLLQVAFVVAVLLVFGILAQNLLASLRRLGISLGFRFL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DNSANFGITEGLIPYDPSESYLKALAVGAVNTLWLSAVSIVLATAMGFVLGMARLSSNWL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARQLATVVTEIFRNVPVLLIVIFWYQGVILTLPGVRNSLSIGGLVFINQRGVKLPGLDPS
HHHHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCC
GWLVPALAIVIAAGWGIRKLLLVCRPELGSRQRNLWVAAGVVLLAVACWVLFPEPPVRLD
CHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
VPVLERFNFRGGIQLSAEFTAMMLGLVTYTGCYIAEVVRGSFLAVPRGQWEAARAVGLSE
CHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHCHHH
LQTFRLVIVPQALRIMIPSLNTQYLTLIKNSSLAIAVGFSDLFNISSTIINQSGRSVEMF
HHHHHEEEEHHHHHHHHCCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHCCCCCHHHHH
AILMATYLTFNLVVSYGMNWLNARVKLVER
HHHHHHHHHHHHHHHHCCHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]