Click here to switch to the map view.

The map label for this gene is yhdY [H]

Identifier: 86605964

GI number: 86605964

Start: 1292098

End: 1293303

Strand: Reverse

Name: yhdY [H]

Synonym: CYA_1282

Alternate gene names: 86605964

Gene position: 1293303-1292098 (Counterclockwise)

Preceding gene: 86605965

Following gene: 86605963

Centisome position: 44.1

GC content: 61.86

Gene sequence:

>1206_bases
ATGCCCAGCAGTCTCTCCTCTCCCCTTGTAGAAGAAAAGGTACTCCCCCCCAGGGAGAAACAAAGTCCTCTGGCTTGGGT
GCGCCGCAACCTGTTCGACTCCTGGCTGAGCACCTTGCTCACCTTGGTCTCCGCCTTGGTGTTGGCCTGGGCAATTTCCC
TGTTCTGGAACTGGGCGTTCACCCAAGCCCGCTGGGAAGTGATCCCGGCCAACCTGAAAATCTTTGCCAGCGGCACCTAC
CCCAGCAGCCAACTGTGGCGGGTGTGGGCGGTGTTGGGAATTGTGCTGGCCACCCTAGGGGTAGCGGGGGGGGCTTGGGG
CGGTGTGCTGCTGCACTACCTCATTCTCTTGGGAGCTGCTATGGGCTTAGCCGCGTTCCTGCCTTTGGGAACCCAGTCGC
AGGGGTGGCTGGCGGTTTGCTCTGGCGTCACTTTTGCCGCTATTGCCCTCAGTCGCGGACGGGAATCCTGGCGGCTGGCT
TCCATCTGGGTTTGGGCCCTGATCTTGCCCCTCTGTCTGGAGCTGCTGCTGGGCAACCTGGGCCCCAATTGGCCGGCAGT
GCGGGCTGAGCAACTGTCTGGACTGCTGCTGACCTTGATCTTGGCGGCAGCCGCCATGATCATCGGCTTCCCCATTGGGG
TGTTGCTGGCGTTGGGCCGGGCCAATCGGGCGTTGCCGGTAATCCGGATCTTCTGCACGCTGGTGATCGAGCTGGTGCGG
GGGGTGCCTCTGACCACCATTCTGTTTGCCGCCTGGCTGTTGGTGCCCTTCTTTCTGGGGGGGATCAGCGTCAACCTGAT
CATCCGGGCGGAGGTGGCCTTCATCTTGTTTACAGCCGTGTACGTGGCCGAGGACGTGCGGGGCGGCCTGCAGTCGATCC
CGCTGGGCCAGCTAGAAGCGGCACGGGCGCTGGGCTTGAACCCCTTTCAAGTGACCGCTTTGGTGATTTTGCCCCAGGCG
TTGCGGGCAGCTGTTCCGGCGCTGGTGAACGAGTTCCTCACCCTCTTCAAAGACACGTCACTGGTGTTCATTGTCGGCCT
CATCGACCTGCTGCAGGCGGGGCGCGTGGTGTTCACCAACCCCAACTGGCTAGGCACCCAGCGGGAAGTGCTGTTTTTTA
TCGGCCTAATCTACTTCATCTGCTGTTTTGCCATGGCCTATGCCGCCCAGCAGGTGGAAAAGGCGCTGGGCTTGGGCAAG
CGCTAA

Upstream 100 bases:

>100_bases
GTTCGCCATCCTCATGGCCACCTACCTGACCTTTAACCTGGTGGTTTCCTACGGCATGAACTGGCTCAATGCCCGCGTCA
AATTGGTGGAGCGCTAACCC

Downstream 100 bases:

>100_bases
AAACTGCAACCGCTCCCCTTCCCAGTTTCATCTGCTCAGGCCCCGGGATCCCCTTAACGGGCTTGGGCCACCGCCCAATG
GCGAGGAGTGTTGGGCAAGT

Product: polar amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MPSSLSSPLVEEKVLPPREKQSPLAWVRRNLFDSWLSTLLTLVSALVLAWAISLFWNWAFTQARWEVIPANLKIFASGTY
PSSQLWRVWAVLGIVLATLGVAGGAWGGVLLHYLILLGAAMGLAAFLPLGTQSQGWLAVCSGVTFAAIALSRGRESWRLA
SIWVWALILPLCLELLLGNLGPNWPAVRAEQLSGLLLTLILAAAAMIIGFPIGVLLALGRANRALPVIRIFCTLVIELVR
GVPLTTILFAAWLLVPFFLGGISVNLIIRAEVAFILFTAVYVAEDVRGGLQSIPLGQLEAARALGLNPFQVTALVILPQA
LRAAVPALVNEFLTLFKDTSLVFIVGLIDLLQAGRVVFTNPNWLGTQREVLFFIGLIYFICCFAMAYAAQQVEKALGLGK
R

Sequences:

>Translated_401_residues
MPSSLSSPLVEEKVLPPREKQSPLAWVRRNLFDSWLSTLLTLVSALVLAWAISLFWNWAFTQARWEVIPANLKIFASGTY
PSSQLWRVWAVLGIVLATLGVAGGAWGGVLLHYLILLGAAMGLAAFLPLGTQSQGWLAVCSGVTFAAIALSRGRESWRLA
SIWVWALILPLCLELLLGNLGPNWPAVRAEQLSGLLLTLILAAAAMIIGFPIGVLLALGRANRALPVIRIFCTLVIELVR
GVPLTTILFAAWLLVPFFLGGISVNLIIRAEVAFILFTAVYVAEDVRGGLQSIPLGQLEAARALGLNPFQVTALVILPQA
LRAAVPALVNEFLTLFKDTSLVFIVGLIDLLQAGRVVFTNPNWLGTQREVLFFIGLIYFICCFAMAYAAQQVEKALGLGK
R
>Mature_400_residues
PSSLSSPLVEEKVLPPREKQSPLAWVRRNLFDSWLSTLLTLVSALVLAWAISLFWNWAFTQARWEVIPANLKIFASGTYP
SSQLWRVWAVLGIVLATLGVAGGAWGGVLLHYLILLGAAMGLAAFLPLGTQSQGWLAVCSGVTFAAIALSRGRESWRLAS
IWVWALILPLCLELLLGNLGPNWPAVRAEQLSGLLLTLILAAAAMIIGFPIGVLLALGRANRALPVIRIFCTLVIELVRG
VPLTTILFAAWLLVPFFLGGISVNLIIRAEVAFILFTAVYVAEDVRGGLQSIPLGQLEAARALGLNPFQVTALVILPQAL
RAAVPALVNEFLTLFKDTSLVFIVGLIDLLQAGRVVFTNPNWLGTQREVLFFIGLIYFICCFAMAYAAQQVEKALGLGKR

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=406, Percent_Identity=36.9458128078818, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI1786873, Length=199, Percent_Identity=38.6934673366834, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1788226, Length=215, Percent_Identity=33.953488372093, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1786874, Length=179, Percent_Identity=33.5195530726257, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788645, Length=180, Percent_Identity=30.5555555555556, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787030, Length=223, Percent_Identity=26.457399103139, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI48994930, Length=133, Percent_Identity=32.3308270676692, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787087, Length=221, Percent_Identity=26.2443438914027, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 43491; Mature: 43359

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSSLSSPLVEEKVLPPREKQSPLAWVRRNLFDSWLSTLLTLVSALVLAWAISLFWNWAF
CCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQARWEVIPANLKIFASGTYPSSQLWRVWAVLGIVLATLGVAGGAWGGVLLHYLILLGAA
HHHHHEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
MGLAAFLPLGTQSQGWLAVCSGVTFAAIALSRGRESWRLASIWVWALILPLCLELLLGNL
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GPNWPAVRAEQLSGLLLTLILAAAAMIIGFPIGVLLALGRANRALPVIRIFCTLVIELVR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GVPLTTILFAAWLLVPFFLGGISVNLIIRAEVAFILFTAVYVAEDVRGGLQSIPLGQLEA
CCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHH
ARALGLNPFQVTALVILPQALRAAVPALVNEFLTLFKDTSLVFIVGLIDLLQAGRVVFTN
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
PNWLGTQREVLFFIGLIYFICCFAMAYAAQQVEKALGLGKR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PSSLSSPLVEEKVLPPREKQSPLAWVRRNLFDSWLSTLLTLVSALVLAWAISLFWNWAF
CCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TQARWEVIPANLKIFASGTYPSSQLWRVWAVLGIVLATLGVAGGAWGGVLLHYLILLGAA
HHHHHEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
MGLAAFLPLGTQSQGWLAVCSGVTFAAIALSRGRESWRLASIWVWALILPLCLELLLGNL
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
GPNWPAVRAEQLSGLLLTLILAAAAMIIGFPIGVLLALGRANRALPVIRIFCTLVIELVR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GVPLTTILFAAWLLVPFFLGGISVNLIIRAEVAFILFTAVYVAEDVRGGLQSIPLGQLEA
CCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHH
ARALGLNPFQVTALVILPQALRAAVPALVNEFLTLFKDTSLVFIVGLIDLLQAGRVVFTN
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
PNWLGTQREVLFFIGLIYFICCFAMAYAAQQVEKALGLGKR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]