Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

Click here to switch to the map view.

The map label for this gene is 86605885

Identifier: 86605885

GI number: 86605885

Start: 1210709

End: 1211260

Strand: Reverse

Name: 86605885

Synonym: CYA_1199

Alternate gene names: NA

Gene position: 1211260-1210709 (Counterclockwise)

Preceding gene: 86605888

Following gene: 86605883

Centisome position: 41.3

GC content: 59.96

Gene sequence:

>552_bases
ATGTTTACCCAATCGGCTACACCCGCTACGTCAGGGCTGCCACAAATGGATTTGACGCAAGTCCCGCCAGAGATTACCTG
CGATGGCAGCGACTTAGACTGGAGCCAAGCCGCAGCGATCGAGGGCACCCAACCCCAAGAGGAGAACTTGCAGGGCTGGA
TCGCCTTTTACGGCCTGCGGGTCAACCAAGAACCGGGCAACATCCTGCACTGGCAGGGGCAGCCGCTGCGGGCCAGCCGC
ATTCGCTTTTTTGTGAAAAATGTGGCTTGGCGCTATGGCTTTTCTTTCTCCACCAGCATCCGCTCTCCTCTCGGCAAAGG
GATCCCCACGCCTTCGGAGTGGCGCTACCCCGGTCTTTGCCGCTACGGCCTGGTGCTGTTCCAGCCCAACGCCCGGTTGG
TGGCCCGGCAGGTCTGGGAATCCTCGCCGGAGCAGCCGCAAGAGGTGGATCTGGATCCCAACTTGGATATCGCCTTCAAC
GTCAATGACGCCAAGGGCAGCTACGGCGACAACAGCGGCAGCTTCGATATCTATGTGCAGGTGGTGAACTGA

Upstream 100 bases:

>100_bases
GGTTTGTCTTTAAAACCTTTCCCCGGCTCATTTTTGGGATCCCTGTAAGCTCTTTACAGCTTCTCACTTCTGGAGTCATT
TTGAAGAAAAGGAGAGATAG

Downstream 100 bases:

>100_bases
GCTGCAGCAGGGATCCCGCTCGAGAACAGTTGCCGGGTGGGATCCCATCTTCTACAATAGGTGAACCGGCGGCTGGATCC
CAGCTTGCTGAGGTCTCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MFTQSATPATSGLPQMDLTQVPPEITCDGSDLDWSQAAAIEGTQPQEENLQGWIAFYGLRVNQEPGNILHWQGQPLRASR
IRFFVKNVAWRYGFSFSTSIRSPLGKGIPTPSEWRYPGLCRYGLVLFQPNARLVARQVWESSPEQPQEVDLDPNLDIAFN
VNDAKGSYGDNSGSFDIYVQVVN

Sequences:

>Translated_183_residues
MFTQSATPATSGLPQMDLTQVPPEITCDGSDLDWSQAAAIEGTQPQEENLQGWIAFYGLRVNQEPGNILHWQGQPLRASR
IRFFVKNVAWRYGFSFSTSIRSPLGKGIPTPSEWRYPGLCRYGLVLFQPNARLVARQVWESSPEQPQEVDLDPNLDIAFN
VNDAKGSYGDNSGSFDIYVQVVN
>Mature_183_residues
MFTQSATPATSGLPQMDLTQVPPEITCDGSDLDWSQAAAIEGTQPQEENLQGWIAFYGLRVNQEPGNILHWQGQPLRASR
IRFFVKNVAWRYGFSFSTSIRSPLGKGIPTPSEWRYPGLCRYGLVLFQPNARLVARQVWESSPEQPQEVDLDPNLDIAFN
VNDAKGSYGDNSGSFDIYVQVVN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20440; Mature: 20440

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTQSATPATSGLPQMDLTQVPPEITCDGSDLDWSQAAAIEGTQPQEENLQGWIAFYGLR
CCCCCCCCCCCCCCCCCHHHCCCCEEECCCCCCCCHHEECCCCCCCHHCCCEEEEEEEEE
VNQEPGNILHWQGQPLRASRIRFFVKNVAWRYGFSFSTSIRSPLGKGIPTPSEWRYPGLC
EECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEECCHHHHHHHCCCCCCCCCCCCCEE
RYGLVLFQPNARLVARQVWESSPEQPQEVDLDPNLDIAFNVNDAKGSYGDNSGSFDIYVQ
EECEEEECCCHHHHHHHHHHCCCCCCCEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEE
VVN
EEC
>Mature Secondary Structure
MFTQSATPATSGLPQMDLTQVPPEITCDGSDLDWSQAAAIEGTQPQEENLQGWIAFYGLR
CCCCCCCCCCCCCCCCCHHHCCCCEEECCCCCCCCHHEECCCCCCCHHCCCEEEEEEEEE
VNQEPGNILHWQGQPLRASRIRFFVKNVAWRYGFSFSTSIRSPLGKGIPTPSEWRYPGLC
EECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEECCHHHHHHHCCCCCCCCCCCCCEE
RYGLVLFQPNARLVARQVWESSPEQPQEVDLDPNLDIAFNVNDAKGSYGDNSGSFDIYVQ
EECEEEECCCHHHHHHHHHHCCCCCCCEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEE
VVN
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA