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The map label for this gene is infA

Identifier: 86605845

GI number: 86605845

Start: 1180726

End: 1180950

Strand: Reverse

Name: infA

Synonym: CYA_1157

Alternate gene names: 86605845

Gene position: 1180950-1180726 (Counterclockwise)

Preceding gene: 86605846

Following gene: 86605844

Centisome position: 40.27

GC content: 55.11

Gene sequence:

>225_bases
TTGTCTAAAGAAGACGCCATTGAAGTGGAAGGGGTGGTTACCGAGTCCTTGCCCAACGCCATGTTCCGGGTGGACCTGGA
CAACGGCTTTAACGTCCTTGCCCACATCTCCGGCAAGATCCGCCGCAACTACATCAAGATCTTGCCCGGCGACCGGGTCA
AGGTAGAGCTCAGCCCCTATGACCTGAACAAAGGGCGCATCACTTACCGCCTCAAGAAAAAGTAG

Upstream 100 bases:

>100_bases
GGATAGAAGAGGTGGAGTATTGTTTCGGCTCTTAACTCGCTCTTAACAGGGCGGGTTTCCTATCGATATTTCTGTTGTGT
TGTTTTTTAAGGAGGGTTCC

Downstream 100 bases:

>100_bases
CCGTCTGGCCTTAGCTGGGGCCGCTGAGCATGAAGGAGCTGAGCCAAGTTCTCAAAACCGGCCTCTGGGTTGCGGCCGGC
GGGGTAAGTGCCCTGGCCGT

Product: translation initiation factor IF-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 74; Mature: 73

Protein sequence:

>74_residues
MSKEDAIEVEGVVTESLPNAMFRVDLDNGFNVLAHISGKIRRNYIKILPGDRVKVELSPYDLNKGRITYRLKKK

Sequences:

>Translated_74_residues
MSKEDAIEVEGVVTESLPNAMFRVDLDNGFNVLAHISGKIRRNYIKILPGDRVKVELSPYDLNKGRITYRLKKK
>Mature_73_residues
SKEDAIEVEGVVTESLPNAMFRVDLDNGFNVLAHISGKIRRNYIKILPGDRVKVELSPYDLNKGRITYRLKKK

Specific function: No specific function has so far been attributed to this initiation factor; however, it seems to stimulate more or less all the activities of the other two initiation factors, IF-2 and IF-3

COG id: COG0361

COG function: function code J; Translation initiation factor 1 (IF-1)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1-like domain

Homologues:

Organism=Escherichia coli, GI1787110, Length=70, Percent_Identity=67.1428571428571, Blast_Score=105, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IF1_SYNJA (Q2JV98)

Other databases:

- EMBL:   CP000239
- RefSeq:   YP_474608.1
- ProteinModelPortal:   Q2JV98
- SMR:   Q2JV98
- STRING:   Q2JV98
- GeneID:   3898866
- GenomeReviews:   CP000239_GR
- KEGG:   cya:CYA_1157
- TIGR:   CYA_1157
- eggNOG:   COG0361
- HOGENOM:   HBG286099
- OMA:   KMRMHFI
- ProtClustDB:   PRK00276
- BioCyc:   SSP321327:CYA_1157-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00075
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR022967
- InterPro:   IPR006196
- InterPro:   IPR004368
- Gene3D:   G3DSA:2.40.50.140
- SMART:   SM00316
- TIGRFAMs:   TIGR00008

Pfam domain/function: PF01176 eIF-1a; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 8461; Mature: 8330

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50832 S1_IF1_TYPE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEDAIEVEGVVTESLPNAMFRVDLDNGFNVLAHISGKIRRNYIKILPGDRVKVELSPY
CCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCCCEEEEEECCC
DLNKGRITYRLKKK
CCCCCEEEEEEECC
>Mature Secondary Structure 
SKEDAIEVEGVVTESLPNAMFRVDLDNGFNVLAHISGKIRRNYIKILPGDRVKVELSPY
CCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEEECCCCEEEEEECCC
DLNKGRITYRLKKK
CCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA