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The map label for this gene is yjcF [C]

Identifier: 86605838

GI number: 86605838

Start: 1173595

End: 1174071

Strand: Reverse

Name: yjcF [C]

Synonym: CYA_1150

Alternate gene names: 86605838

Gene position: 1174071-1173595 (Counterclockwise)

Preceding gene: 86605839

Following gene: 86605837

Centisome position: 40.03

GC content: 63.31

Gene sequence:

>477_bases
ATGCCCCGAGTGACCACTGCAGAGGAGCTGCTGGCAGAATATGCCGCCGGCGAGCGCAACTTTCAAGAATCCAACCTGGT
GGGCGTGGATCTGGTGCGCGCCACCCTGCAGGGGGCGAATCTGAGAGGGGCCAACCTTTCCTTTGGCAAGCTGAGTGGAA
TTAACTTGCAGGAGGCCGATCTGCGGGGGGCCGATCTCAGCTCCGCCAACCTGATGGGGGCCAACCTGCGCGGGGCCAAC
CTTTGGGAAGCCAACTTGATCGGCGCCGATCTCAGCTTTGCCGATTTGCGGGAAGCCAACTTGCACGGGGCCTACCTTTG
GGAAGCCAAGCTAACCCGCGCCCAACTGCAGGGATCCGACCTGAGCGGGGCAAAAATAGGCGGAGCAGTGCTGACGGGCG
CTGACCTGAGCGGCGCCATCCTGCCCGATGGCACAGTGCAGCCCTGGGCTGCTCCGTCGGCCAGCAAGGCAGAATAG

Upstream 100 bases:

>100_bases
ATGGACGGTATAATGGCCAACATTTAGCATTGAGTCATTAGCACCTCGTTTGGCAATCAAGGGTTGCTGAAATAAACTCG
GCAATTGGGGGTACCCGGCC

Downstream 100 bases:

>100_bases
AACTGTTGCGACGGGATCCCTCATGCTGCTGCTGTTCAACCTGGCCTTGACACTGCTGCTGGCTTTGGGAGTGGCAGTCC
TGGCCGGACAAAACCCCACC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MPRVTTAEELLAEYAAGERNFQESNLVGVDLVRATLQGANLRGANLSFGKLSGINLQEADLRGADLSSANLMGANLRGAN
LWEANLIGADLSFADLREANLHGAYLWEAKLTRAQLQGSDLSGAKIGGAVLTGADLSGAILPDGTVQPWAAPSASKAE

Sequences:

>Translated_158_residues
MPRVTTAEELLAEYAAGERNFQESNLVGVDLVRATLQGANLRGANLSFGKLSGINLQEADLRGADLSSANLMGANLRGAN
LWEANLIGADLSFADLREANLHGAYLWEAKLTRAQLQGSDLSGAKIGGAVLTGADLSGAILPDGTVQPWAAPSASKAE
>Mature_157_residues
PRVTTAEELLAEYAAGERNFQESNLVGVDLVRATLQGANLRGANLSFGKLSGINLQEADLRGADLSSANLMGANLRGANL
WEANLIGADLSFADLREANLHGAYLWEAKLTRAQLQGSDLSGAKIGGAVLTGADLSGAILPDGTVQPWAAPSASKAE

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=88, Percent_Identity=40.9090909090909, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI221377802, Length=137, Percent_Identity=37.956204379562, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 16404; Mature: 16272

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRVTTAEELLAEYAAGERNFQESNLVGVDLVRATLQGANLRGANLSFGKLSGINLQEAD
CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
LRGADLSSANLMGANLRGANLWEANLIGADLSFADLREANLHGAYLWEAKLTRAQLQGSD
CCCCCCCCCCEECCCCCCCCEEECEEECCCCCHHHHHHCCCCEEEEEECHHHHHHHCCCC
LSGAKIGGAVLTGADLSGAILPDGTVQPWAAPSASKAE
CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRVTTAEELLAEYAAGERNFQESNLVGVDLVRATLQGANLRGANLSFGKLSGINLQEAD
CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
LRGADLSSANLMGANLRGANLWEANLIGADLSFADLREANLHGAYLWEAKLTRAQLQGSD
CCCCCCCCCCEECCCCCCCCEEECEEECCCCCHHHHHHCCCCEEEEEECHHHHHHHCCCC
LSGAKIGGAVLTGADLSGAILPDGTVQPWAAPSASKAE
CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]