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The map label for this gene is sun

Identifier: 86605784

GI number: 86605784

Start: 1115580

End: 1116926

Strand: Reverse

Name: sun

Synonym: CYA_1094

Alternate gene names: 86605784

Gene position: 1116926-1115580 (Counterclockwise)

Preceding gene: 86605785

Following gene: 86605783

Centisome position: 38.08

GC content: 65.11

Gene sequence:

>1347_bases
ATGAACGCGCGTCAACTGGCCCTCTTGGCTCTGCAGAAGATCGAGCGGCACAACGCCTATGCCGACGTGGTGCTAGAACA
CTTGTTGGCCCATAGCCGCCTGATCCCTGCCGACTGCCACCTGGTCAGCGAGTTGGTGTATGGGATTACCCGCCGTCGCC
GCACCCTTGATGCCCTGATCGACTGCTTTGCCCGGCGCCCCGCCCACCAGCAACCGCTCGATTTGCGGCTGATTCTCTAC
CTTGGCTTCTACCAACTGGCTTTTCTGGATCACATCCCGCCCAGGGCCGCCATTCACACCAGCGTGGAGCTGGCCCGCCA
GGTGGGCCTGGGATCCCTGACGGGGGTAGTCAACGGCATCTTGCGCGCCTACCAGCGGCAAGCGTTGGATGGGGCGGAAA
AGGATCCCCTCAAGCCCTTGCAGGACACTCTGCCCACTGACCCGATTCAGGCCTTGGGGATCCGGCATAGCTTTCCCGAT
TGGCTGGTGCGCCTCTGGTGGGAGCGCCTGGGACCAGCCGAGACCGAGCAGTTGTGCGCCTGGTTCAACCAGCCGCCCCA
CCTGGATCTGCGGGTCAACCCGCTGCGGGCGGATGTGGACAAAGTCATCCAAGCCTTGGCAGAAGCGGGGATCCCTGCCT
CACCCATCCCTGAGGTGCCGGGCGCCCTGCGCCTGGGACAACATGCCGGCGACATCACGGCCCTGCCCGGCTTTGCCCAA
GGCTGGTGGAGCGTTCAGGATGCCAGCGCCCAGCAGGTGGTGCACTATCTGGATCCCCAGCCGGGAGAGCGAGTCATCGA
CTGCTGCGCCGCTCCGGGCGGCAAGACCACGCATATGGCCGAGCAGATGCAGGATCGCGGCGAGATCTGGGCCCTGGACC
GCCATCCCCACCGCCTGCGCCGCCTAGAGGAAAATGTGCAGCGCTTGGGCTTGAGCTCGATCCGTCCCCTGGCCATCGAC
CTGCTCTCCCTGGACGCCGCTGCCGAACCTCCTGCACCCCTGCCCCCGTGGCAGAGCGCCGACCGAGTGTTGTTGGATGC
CCCCTGCTCCGGCTTGGGCACCCTGCACCGCCACGCCGACGCCCGCTGGCGGCAAACCCCCGCCCAGATTCAAGAGCTGG
CCCATCTGCAAGCTCAGCTTCTGCAGGTGGCAGCCCGGTGGCTCAAGCCGGGCGGACTGTTGGTGTACGCCACCTGCACC
CTGCATCCTGCCGAAAACGAGGCAGTCATCCAGTCTTTTCTGAACCGGCATCCCCACTGGGCTGCCGAAGGGGATCCCCT
GCTCATCTGGCCTCATCGCCAGGATCGGGATGGATTTTTTATCCAACGGTTGCGTCGCCGCGATTAA

Upstream 100 bases:

>100_bases
ACTAAAGTGGCTAGCGGGCTTTTCCGGCGCTCACTCAAGTGCGGGGCTACCAAGCTATCCTTTTGTGTCGGGAAGCAACC
TGATCTTTTTTGGAGCGGCC

Downstream 100 bases:

>100_bases
GCCTTCCCCGCCCCATCTCTCCTCTTCCTCCGCATGGCTTCTGAGCTGCTCACCAGCCCCAAAAACCCTTGGATCCGACA
GTTGCGGCAGTTGCACCGCA

Product: ribosomal RNA small subunit methyltransferase B

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MNARQLALLALQKIERHNAYADVVLEHLLAHSRLIPADCHLVSELVYGITRRRRTLDALIDCFARRPAHQQPLDLRLILY
LGFYQLAFLDHIPPRAAIHTSVELARQVGLGSLTGVVNGILRAYQRQALDGAEKDPLKPLQDTLPTDPIQALGIRHSFPD
WLVRLWWERLGPAETEQLCAWFNQPPHLDLRVNPLRADVDKVIQALAEAGIPASPIPEVPGALRLGQHAGDITALPGFAQ
GWWSVQDASAQQVVHYLDPQPGERVIDCCAAPGGKTTHMAEQMQDRGEIWALDRHPHRLRRLEENVQRLGLSSIRPLAID
LLSLDAAAEPPAPLPPWQSADRVLLDAPCSGLGTLHRHADARWRQTPAQIQELAHLQAQLLQVAARWLKPGGLLVYATCT
LHPAENEAVIQSFLNRHPHWAAEGDPLLIWPHRQDRDGFFIQRLRRRD

Sequences:

>Translated_448_residues
MNARQLALLALQKIERHNAYADVVLEHLLAHSRLIPADCHLVSELVYGITRRRRTLDALIDCFARRPAHQQPLDLRLILY
LGFYQLAFLDHIPPRAAIHTSVELARQVGLGSLTGVVNGILRAYQRQALDGAEKDPLKPLQDTLPTDPIQALGIRHSFPD
WLVRLWWERLGPAETEQLCAWFNQPPHLDLRVNPLRADVDKVIQALAEAGIPASPIPEVPGALRLGQHAGDITALPGFAQ
GWWSVQDASAQQVVHYLDPQPGERVIDCCAAPGGKTTHMAEQMQDRGEIWALDRHPHRLRRLEENVQRLGLSSIRPLAID
LLSLDAAAEPPAPLPPWQSADRVLLDAPCSGLGTLHRHADARWRQTPAQIQELAHLQAQLLQVAARWLKPGGLLVYATCT
LHPAENEAVIQSFLNRHPHWAAEGDPLLIWPHRQDRDGFFIQRLRRRD
>Mature_448_residues
MNARQLALLALQKIERHNAYADVVLEHLLAHSRLIPADCHLVSELVYGITRRRRTLDALIDCFARRPAHQQPLDLRLILY
LGFYQLAFLDHIPPRAAIHTSVELARQVGLGSLTGVVNGILRAYQRQALDGAEKDPLKPLQDTLPTDPIQALGIRHSFPD
WLVRLWWERLGPAETEQLCAWFNQPPHLDLRVNPLRADVDKVIQALAEAGIPASPIPEVPGALRLGQHAGDITALPGFAQ
GWWSVQDASAQQVVHYLDPQPGERVIDCCAAPGGKTTHMAEQMQDRGEIWALDRHPHRLRRLEENVQRLGLSSIRPLAID
LLSLDAAAEPPAPLPPWQSADRVLLDAPCSGLGTLHRHADARWRQTPAQIQELAHLQAQLLQVAARWLKPGGLLVYATCT
LHPAENEAVIQSFLNRHPHWAAEGDPLLIWPHRQDRDGFFIQRLRRRD

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI32698918, Length=187, Percent_Identity=41.7112299465241, Blast_Score=135, Evalue=1e-31,
Organism=Homo sapiens, GI76150625, Length=322, Percent_Identity=30.1242236024845, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI76150623, Length=322, Percent_Identity=30.1242236024845, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI270288818, Length=205, Percent_Identity=32.1951219512195, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI23199998, Length=205, Percent_Identity=32.1951219512195, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI8922322, Length=205, Percent_Identity=32.1951219512195, Blast_Score=93, Evalue=6e-19,
Organism=Homo sapiens, GI270288816, Length=205, Percent_Identity=32.1951219512195, Blast_Score=93, Evalue=6e-19,
Organism=Homo sapiens, GI39995082, Length=182, Percent_Identity=31.3186813186813, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI301336155, Length=182, Percent_Identity=31.3186813186813, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI11545785, Length=166, Percent_Identity=34.3373493975904, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI40316918, Length=276, Percent_Identity=29.3478260869565, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI2367212, Length=452, Percent_Identity=33.4070796460177, Blast_Score=214, Evalue=6e-57,
Organism=Escherichia coli, GI87081985, Length=285, Percent_Identity=32.280701754386, Blast_Score=125, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI17536757, Length=320, Percent_Identity=26.25, Blast_Score=117, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI115534021, Length=231, Percent_Identity=28.1385281385281, Blast_Score=92, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI71998419, Length=231, Percent_Identity=28.1385281385281, Blast_Score=91, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI25143471, Length=165, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324268, Length=344, Percent_Identity=28.1976744186047, Blast_Score=129, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6319447, Length=189, Percent_Identity=29.6296296296296, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24668781, Length=248, Percent_Identity=34.6774193548387, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI21356513, Length=248, Percent_Identity=34.6774193548387, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI22024126, Length=286, Percent_Identity=27.972027972028, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI21355201, Length=184, Percent_Identity=31.5217391304348, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI21356579, Length=178, Percent_Identity=29.2134831460674, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19920494, Length=164, Percent_Identity=31.0975609756098, Blast_Score=75, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 50256; Mature: 50256

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNARQLALLALQKIERHNAYADVVLEHLLAHSRLIPADCHLVSELVYGITRRRRTLDALI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DCFARRPAHQQPLDLRLILYLGFYQLAFLDHIPPRAAIHTSVELARQVGLGSLTGVVNGI
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
LRAYQRQALDGAEKDPLKPLQDTLPTDPIQALGIRHSFPDWLVRLWWERLGPAETEQLCA
HHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHH
WFNQPPHLDLRVNPLRADVDKVIQALAEAGIPASPIPEVPGALRLGQHAGDITALPGFAQ
HHCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
GWWSVQDASAQQVVHYLDPQPGERVIDCCAAPGGKTTHMAEQMQDRGEIWALDRHPHRLR
CCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCHHHHH
RLEENVQRLGLSSIRPLAIDLLSLDAAAEPPAPLPPWQSADRVLLDAPCSGLGTLHRHAD
HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHC
ARWRQTPAQIQELAHLQAQLLQVAARWLKPGGLLVYATCTLHPAENEAVIQSFLNRHPHW
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCC
AAEGDPLLIWPHRQDRDGFFIQRLRRRD
CCCCCCEEEECCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MNARQLALLALQKIERHNAYADVVLEHLLAHSRLIPADCHLVSELVYGITRRRRTLDALI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
DCFARRPAHQQPLDLRLILYLGFYQLAFLDHIPPRAAIHTSVELARQVGLGSLTGVVNGI
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
LRAYQRQALDGAEKDPLKPLQDTLPTDPIQALGIRHSFPDWLVRLWWERLGPAETEQLCA
HHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHH
WFNQPPHLDLRVNPLRADVDKVIQALAEAGIPASPIPEVPGALRLGQHAGDITALPGFAQ
HHCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
GWWSVQDASAQQVVHYLDPQPGERVIDCCAAPGGKTTHMAEQMQDRGEIWALDRHPHRLR
CCCCCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCHHHHH
RLEENVQRLGLSSIRPLAIDLLSLDAAAEPPAPLPPWQSADRVLLDAPCSGLGTLHRHAD
HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHC
ARWRQTPAQIQELAHLQAQLLQVAARWLKPGGLLVYATCTLHPAENEAVIQSFLNRHPHW
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCC
AAEGDPLLIWPHRQDRDGFFIQRLRRRD
CCCCCCEEEECCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]