| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
Click here to switch to the map view.
The map label for this gene is 86605707
Identifier: 86605707
GI number: 86605707
Start: 1025028
End: 1025978
Strand: Reverse
Name: 86605707
Synonym: CYA_1008
Alternate gene names: NA
Gene position: 1025978-1025028 (Counterclockwise)
Preceding gene: 86605708
Following gene: 86605706
Centisome position: 34.98
GC content: 46.27
Gene sequence:
>951_bases ATGGCCAGAGTCTGTATTGCTACTACGGTTCGGGATCCAGGCGTGTGCTTGGAGTCGTTCATTCGCTATCACCTTGCCCT TGGAATTGCCCATATTTATATCTTCTTCGACGATCCAGAGGATCCCGCTATTCAGGTGGCACTTCAGTTTTCCGATGTAA CGGCTATTCCCAACGATGAAGCTTTGCAAGTTCAACAAGCATTGGGGAATGTTCTCTACCCAAAATATGGCCCTCATGTT GGCTATGAGGTCATGGCTCGTCAGATCCTTAACGTAGAAACTGCTATACAACTTGCCCTGGATCAGGGCATGGACTGGAT TCTTCATATTGATGGAGATGAGCTTTTTTATCCTGGCCAGATGATGGCTTTGGATTGGTTTGATCAAGTAAGCGACGATA TATTCCAGGTTACGTTCCTAAACCACGAAGCAGCTCCTGAAGTATTTGAAGTCGAGGACTATTTTCGCGATGTCACTCTA TTTAAGAAAAACCCTGCTGCCTTGGAGCCAGGACTCTGTACTGAGTTTCAGAGAGTTTCCGGCAAGAGTCAATACTTTTT GGCTTACCAGAATGGAAAGTCAGCAGCTCGGATCCATCCCTCTCTTCTGCCTAACAGCGTACATAGCTTTGATATTCCAG GGGATCATACTCTAGTAACGTCGTCTCCCTCTATTTTGCACTACTTGAACTGCGGATTCCAGAACTACTATAAAAAATAC GCCCAACTGGGAAACTTTCCCGACTACTGGTGGCGCTCCAAGTCTAATCCTATTCGGGTTCCCTTTCACTTGGCCTCACG GGACGCTTATTGCTCAGGAGATAGAACTTCCATGGCAGCTCTTTATCAAGAGTTCATACTTTACAGCAGTCCTGAAACCA ACCAGAACCTCATCGAAAAGGGTATTCTTACTCGCATCTCCTACCCATCACAGTTACTGTCCTCGCTCTAG
Upstream 100 bases:
>100_bases CCTGCCGGTGTTCGGCCCCAGCCAAGCCTTTGCCGACAGCCGCTTTACCATCAACACTTGGTTAGGAACCAAGCGACTTG CCTAAAGGCTCGAATTCAAC
Downstream 100 bases:
>100_bases TTCACTGGTTTAGCCTAGAGCCCTTGCCTACTCTTGAGGGAGACTGGAGCAACTGAAATAAAAAAGCTCCCCACAGGGAG CCACGGAGTACATAAAGTAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MARVCIATTVRDPGVCLESFIRYHLALGIAHIYIFFDDPEDPAIQVALQFSDVTAIPNDEALQVQQALGNVLYPKYGPHV GYEVMARQILNVETAIQLALDQGMDWILHIDGDELFYPGQMMALDWFDQVSDDIFQVTFLNHEAAPEVFEVEDYFRDVTL FKKNPAALEPGLCTEFQRVSGKSQYFLAYQNGKSAARIHPSLLPNSVHSFDIPGDHTLVTSSPSILHYLNCGFQNYYKKY AQLGNFPDYWWRSKSNPIRVPFHLASRDAYCSGDRTSMAALYQEFILYSSPETNQNLIEKGILTRISYPSQLLSSL
Sequences:
>Translated_316_residues MARVCIATTVRDPGVCLESFIRYHLALGIAHIYIFFDDPEDPAIQVALQFSDVTAIPNDEALQVQQALGNVLYPKYGPHV GYEVMARQILNVETAIQLALDQGMDWILHIDGDELFYPGQMMALDWFDQVSDDIFQVTFLNHEAAPEVFEVEDYFRDVTL FKKNPAALEPGLCTEFQRVSGKSQYFLAYQNGKSAARIHPSLLPNSVHSFDIPGDHTLVTSSPSILHYLNCGFQNYYKKY AQLGNFPDYWWRSKSNPIRVPFHLASRDAYCSGDRTSMAALYQEFILYSSPETNQNLIEKGILTRISYPSQLLSSL >Mature_315_residues ARVCIATTVRDPGVCLESFIRYHLALGIAHIYIFFDDPEDPAIQVALQFSDVTAIPNDEALQVQQALGNVLYPKYGPHVG YEVMARQILNVETAIQLALDQGMDWILHIDGDELFYPGQMMALDWFDQVSDDIFQVTFLNHEAAPEVFEVEDYFRDVTLF KKNPAALEPGLCTEFQRVSGKSQYFLAYQNGKSAARIHPSLLPNSVHSFDIPGDHTLVTSSPSILHYLNCGFQNYYKKYA QLGNFPDYWWRSKSNPIRVPFHLASRDAYCSGDRTSMAALYQEFILYSSPETNQNLIEKGILTRISYPSQLLSSL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35842; Mature: 35711
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARVCIATTVRDPGVCLESFIRYHLALGIAHIYIFFDDPEDPAIQVALQFSDVTAIPNDE CCEEEEEEECCCCCHHHHHHHHHHHHHEEEEEEEEEECCCCCEEEEEEEECCEECCCCCH ALQVQQALGNVLYPKYGPHVGYEVMARQILNVETAIQLALDQGMDWILHIDGDELFYPGQ HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCC MMALDWFDQVSDDIFQVTFLNHEAAPEVFEVEDYFRDVTLFKKNPAALEPGLCTEFQRVS EEEHHHHHHHCCCEEEEEEECCCCCCCCEEHHHHHHHHHEEECCCCCCCCCHHHHHHHHC GKSQYFLAYQNGKSAARIHPSLLPNSVHSFDIPGDHTLVTSSPSILHYLNCGFQNYYKKY CCCEEEEEEECCCCCEEECHHHCCCCCCCCCCCCCCEEEECCCCEEHHHHCCHHHHHHHH AQLGNFPDYWWRSKSNPIRVPFHLASRDAYCSGDRTSMAALYQEFILYSSPETNQNLIEK HHCCCCCHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHH GILTRISYPSQLLSSL HHHHHCCCHHHHHHCC >Mature Secondary Structure ARVCIATTVRDPGVCLESFIRYHLALGIAHIYIFFDDPEDPAIQVALQFSDVTAIPNDE CEEEEEEECCCCCHHHHHHHHHHHHHEEEEEEEEEECCCCCEEEEEEEECCEECCCCCH ALQVQQALGNVLYPKYGPHVGYEVMARQILNVETAIQLALDQGMDWILHIDGDELFYPGQ HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCC MMALDWFDQVSDDIFQVTFLNHEAAPEVFEVEDYFRDVTLFKKNPAALEPGLCTEFQRVS EEEHHHHHHHCCCEEEEEEECCCCCCCCEEHHHHHHHHHEEECCCCCCCCCHHHHHHHHC GKSQYFLAYQNGKSAARIHPSLLPNSVHSFDIPGDHTLVTSSPSILHYLNCGFQNYYKKY CCCEEEEEEECCCCCEEECHHHCCCCCCCCCCCCCCEEEECCCCEEHHHHCCHHHHHHHH AQLGNFPDYWWRSKSNPIRVPFHLASRDAYCSGDRTSMAALYQEFILYSSPETNQNLIEK HHCCCCCHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHH GILTRISYPSQLLSSL HHHHHCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA